Claude Code Session

/home/user/pycpl/pycpl-1.0.3/CMakeLists.txt
/home/user/pycpl/pycpl-1.0.3/setup.cfg
/home/user/pycpl/pycpl-1.0.3/pyproject.toml
/home/user/pycpl/pycpl-1.0.3/tests/test_validation.py
/home/user/pycpl/pycpl-1.0.3/tests/test_regression.py
/home/user/pycpl/pycpl-1.0.3/tests/conftest.py
/home/user/pycpl/pycpl-1.0.3/tests/__init__.py
/home/user/pycpl/pycpl-1.0.3/setup.py
/home/user/pycpl/cpl-7.3.2/configure.ac
/home/user/pycpl/cpl-7.3.2/cpljava/Makefile.am
/home/user/pycpl/cpl-7.3.2/cpljava/Makefile.in
/home/user/pycpl/cpl-7.3.2/libltdl/configure.ac
/home/user/pycpl/cpl-7.3.2/libltdl/configure
/home/user/pycpl/cpl-7.3.2/libltdl/Makefile.am
/home/user/pycpl/cpl-7.3.2/libltdl/Makefile.in
/home/user/pycpl/cpl-7.3.2/cplui/Makefile.am
/home/user/pycpl/cpl-7.3.2/cplui/Makefile.in
/home/user/pycpl/cpl-7.3.2/cpldfs/Makefile.am
/home/user/pycpl/cpl-7.3.2/cpldfs/Makefile.in
/home/user/pycpl/cpl-7.3.2/configure
/home/user/pycpl/cpl-7.3.2/cplcore/Makefile.am
/home/user/pycpl/cpl-7.3.2/cplcore/Makefile.in
/home/user/pycpl/cpl-7.3.2/Makefile.am
/home/user/pycpl/cpl-7.3.2/libcext/configure.ac
/home/user/pycpl/cpl-7.3.2/libcext/configure
/home/user/pycpl/cpl-7.3.2/libcext/Makefile.am
/home/user/pycpl/cpl-7.3.2/libcext/Makefile.in
/home/user/pycpl/cpl-7.3.2/cpldrs/Makefile.am
/home/user/pycpl/cpl-7.3.2/cpldrs/Makefile.in
/home/user/pycpl/cpl-7.3.2/Makefile.in
/home/user/pycpl/fftw-3.3.10/mpi/Makefile.am
/home/user/pycpl/fftw-3.3.10/mpi/Makefile.in
/home/user/pycpl/fftw-3.3.10/configure.ac
/home/user/pycpl/fftw-3.3.10/reodft/Makefile.am
/home/user/pycpl/fftw-3.3.10/reodft/Makefile.in
/home/user/pycpl/fftw-3.3.10/genfft/Makefile.am
/home/user/pycpl/fftw-3.3.10/genfft/Makefile.in
/home/user/pycpl/fftw-3.3.10/threads/Makefile.am
/home/user/pycpl/fftw-3.3.10/threads/Makefile.in
/home/user/pycpl/fftw-3.3.10/simd-support/Makefile.am
/home/user/pycpl/fftw-3.3.10/simd-support/Makefile.in
/home/user/pycpl/fftw-3.3.10/configure
/home/user/pycpl/fftw-3.3.10/m4/Makefile.am
/home/user/pycpl/fftw-3.3.10/m4/Makefile.in
/home/user/pycpl/fftw-3.3.10/kernel/Makefile.am
/home/user/pycpl/fftw-3.3.10/kernel/Makefile.in
/home/user/pycpl/fftw-3.3.10/api/configure.c
/home/user/pycpl/fftw-3.3.10/api/Makefile.am
/home/user/pycpl/fftw-3.3.10/api/Makefile.in
/home/user/pycpl/fftw-3.3.10/CMakeLists.txt

total 34
drwxr-xr-x  8 root root 4096 Nov 17 11:34 .
drwxr-xr-x  3 root root 4096 Nov 17 11:34 ..
drwxr-xr-x  8 root root 4096 Nov 17 11:34 .git
-rw-r--r--  1 root root 1087 Nov 17 11:34 .gitignore
drwxr-xr-x  7 root root 4096 Nov 17 11:34 cfitsio-4.6.2
drwxr-xr-x 11 root root 4096 Nov 17 11:34 cpl-7.3.2
drwxr-xr-x 16 root root 4096 Nov 17 11:34 fftw-3.3.10
drwxr-xr-x  5 root root 4096 Nov 17 11:34 pycpl-1.0.3
drwxr-xr-x  8 root root 4096 Nov 17 11:34 wcslib-8.2.2

/home/user/pycpl
/home/user/pycpl/.git
/home/user/pycpl/.git/branches
/home/user/pycpl/.git/hooks
/home/user/pycpl/.git/info
/home/user/pycpl/.git/logs
/home/user/pycpl/.git/objects
/home/user/pycpl/.git/refs
/home/user/pycpl/cfitsio-4.6.2
/home/user/pycpl/cfitsio-4.6.2/cfitsio.xcodeproj
/home/user/pycpl/cfitsio-4.6.2/cmake
/home/user/pycpl/cfitsio-4.6.2/config
/home/user/pycpl/cfitsio-4.6.2/licenses
/home/user/pycpl/cfitsio-4.6.2/utilities
/home/user/pycpl/cpl-7.3.2
/home/user/pycpl/cpl-7.3.2/admin
/home/user/pycpl/cpl-7.3.2/cplcore
/home/user/pycpl/cpl-7.3.2/cpldfs
/home/user/pycpl/cpl-7.3.2/cpldrs
/home/user/pycpl/cpl-7.3.2/cpljava
/home/user/pycpl/cpl-7.3.2/cplui
/home/user/pycpl/cpl-7.3.2/doxygen
/home/user/pycpl/cpl-7.3.2/libcext
/home/user/pycpl/cpl-7.3.2/libltdl
/home/user/pycpl/fftw-3.3.10
/home/user/pycpl/fftw-3.3.10/api
/home/user/pycpl/fftw-3.3.10/dft
/home/user/pycpl/fftw-3.3.10/genfft
/home/user/pycpl/fftw-3.3.10/kernel
/home/user/pycpl/fftw-3.3.10/libbench2
/home/user/pycpl/fftw-3.3.10/m4
/home/user/pycpl/fftw-3.3.10/mpi
/home/user/pycpl/fftw-3.3.10/rdft
/home/user/pycpl/fftw-3.3.10/reodft
/home/user/pycpl/fftw-3.3.10/simd-support
/home/user/pycpl/fftw-3.3.10/support
/home/user/pycpl/fftw-3.3.10/tests
/home/user/pycpl/fftw-3.3.10/threads
/home/user/pycpl/fftw-3.3.10/tools
/home/user/pycpl/pycpl-1.0.3
/home/user/pycpl/pycpl-1.0.3/cmake
/home/user/pycpl/pycpl-1.0.3/src
/home/user/pycpl/pycpl-1.0.3/tests
/home/user/pycpl/wcslib-8.2.2
/home/user/pycpl/wcslib-8.2.2/C
/home/user/pycpl/wcslib-8.2.2/Fortran
/home/user/pycpl/wcslib-8.2.2/config
/home/user/pycpl/wcslib-8.2.2/doxygen
/home/user/pycpl/wcslib-8.2.2/pgsbox
/home/user/pycpl/wcslib-8.2.2/utils

     1→# This file is part of PyCPL the ESO CPL Python language bindings
     2→# Copyright (C) 2020-2024 European Southern Observatory
     3→#
     4→# This program is free software: you can redistribute it and/or modify
     5→# it under the terms of the GNU General Public License as published by
     6→# the Free Software Foundation, either version 3 of the License, or
     7→# (at your option) any later version.
     8→#
     9→# This program is distributed in the hope that it will be useful,
    10→# but WITHOUT ANY WARRANTY; without even the implied warranty of
    11→# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    12→# GNU General Public License for more details.
    13→#
    14→# You should have received a copy of the GNU General Public License
    15→# along with this program.  If not, see <http://www.gnu.org/licenses/>.
    16→
    17→import os
    18→import sys
    19→import subprocess
    20→from pathlib import Path
    21→
    22→import pybind11
    23→
    24→from setuptools import setup, Extension
    25→from setuptools.command.build_ext import build_ext
    26→
    27→
    28→class CMakeExtension(Extension):
    29→    def __init__(self, name: str, sourcedir: str = "") -> None:
    30→        super().__init__(name, sources=[])
    31→        self.sourcedir = os.fspath(Path(sourcedir).resolve())
    32→
    33→
    34→class CMakeBuildExt(build_ext):
    35→    def run(self) -> None:
    36→        try:
    37→            _ = subprocess.check_output(["cmake", "--version"])
    38→        except OSError as e:
    39→            raise RuntimeError(
    40→                "CMake must be installed to build the following extensions: "
    41→                + ", ".join(e.name for e in self.extensions)
    42→            ) from e
    43→        for ext in self.extensions:
    44→            self.build_extension(ext)
    45→
    46→    def build_extension(self, ext: CMakeExtension) -> None:
    47→        # CAUTION: Using extdir requires trailing slash for auto-detection &
    48→        # inclusion of auxiliary "native" libs
    49→        #
    50→        # Must be in this form due to bug in .resolve() only fixed in
    51→        # Python 3.10+
    52→        ext_fullpath = Path.cwd() / self.get_ext_fullpath(ext.name)
    53→        extdir = ext_fullpath.parent.resolve()
    54→
    55→        debug = (
    56→            int(os.environ.get("PYCPL_BUILD_DEBUG", 0))
    57→            if self.debug is None
    58→            else self.debug
    59→        )
    60→        sanitize = os.environ.get("PYCPL_BUILD_SANITIZE", "")
    61→        # Preferably the namespace protected variable should be used,
    62→        # however the environment variable VERBOSE is checked and used
    63→        # by cmake and its generated scripts. So we are conservative here
    64→        # in order to have a consistent behavior.
    65→        verbose = int(os.environ.get("PYCPL_BUILD_VERBOSE", 0)) or int(
    66→            os.environ.get("VERBOSE", 0)
    67→        )
    68→
    69→        cmake_args = []
    70→        build_args = []
    71→
    72→        if verbose:
    73→            cmake_args += ["-DCMAKE_VERBOSE_MAKEFILE=TRUE"]
    74→
    75→        if sanitize in ["address", "leak"]:
    76→            debug = 1
    77→            cmake_args += [f"-DSANITIZE:STRING={sanitize}"]
    78→
    79→        cfg = "Debug" if debug else "Release"
    80→        cmake_args += [
    81→            f"-DCMAKE_BUILD_TYPE={cfg}",  # not used on MSVC, but no harm
    82→            f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}{os.sep}",
    83→            f"-DPython3_EXECUTABLE={sys.executable}",
    84→        ]
    85→
    86→        if "CMAKE_ARGS" in os.environ:
    87→            cmake_args += [item for item in os.environ["CMAKE_ARGS"].split(" ") if item]
    88→
    89→        cmake_args += [f"-DPYCPL_VERSION={self.distribution.get_version()}"]
    90→
    91→        cmake_args += ["-Dpybind11_DIR:PATH=" + pybind11.get_cmake_dir()]
    92→
    93→        cpldir = os.environ.get("CPLDIR", None)
    94→        if cpldir is not None:
    95→            cmake_args += [f"-DCPL_ROOT:PATH={Path(cpldir).resolve()}"]
    96→        recipedir = os.environ.get("PYCPL_RECIPE_DIR", None)
    97→        if recipedir is not None:
    98→            cmake_args += [f"-DPYCPL_RECIPE_DIR:PATH={Path(recipedir).resolve()}"]
    99→
   100→        # Set CMAKE_BUILD_PARALLEL_LEVEL to control the parallel build level
   101→        # across all generators.
   102→        if "CMAKE_BUILD_PARALLEL_LEVEL" not in os.environ:
   103→            # self.parallel is a Python 3 only way to set parallel jobs by hand
   104→            # using -j in the build_ext call, not supported by pip or PyPA-build.
   105→            if hasattr(self, "parallel") and self.parallel:
   106→                # CMake 3.12+ only.
   107→                build_args += [f"-j{self.parallel}"]
   108→
   109→        build_temp = Path(self.build_temp) / ext.name
   110→        if not build_temp.exists():
   111→            build_temp.mkdir(parents=True)
   112→
   113→        subprocess.run(
   114→            ["cmake", ext.sourcedir, *cmake_args], cwd=build_temp, check=True
   115→        )
   116→        subprocess.run(
   117→            ["cmake", "--build", ".", *build_args], cwd=build_temp, check=True
   118→        )
   119→
   120→
   121→setup(
   122→    ext_modules=[CMakeExtension("cpl")],
   123→    cmdclass={"build_ext": CMakeBuildExt},
   124→)
   125→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

     1→# This file is part of PyCPL the ESO CPL Python language bindings
     2→# Copyright (C) 2020-2024 European Southern Observatory
     3→#
     4→# This program is free software: you can redistribute it and/or modify
     5→# it under the terms of the GNU General Public License as published by
     6→# the Free Software Foundation, either version 3 of the License, or
     7→# (at your option) any later version.
     8→#
     9→# This program is distributed in the hope that it will be useful,
    10→# but WITHOUT ANY WARRANTY; without even the implied warranty of
    11→# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    12→# GNU General Public License for more details.
    13→#
    14→# You should have received a copy of the GNU General Public License
    15→# along with this program.  If not, see <http://www.gnu.org/licenses/>.
    16→
    17→cmake_minimum_required(VERSION 3.12)
    18→project(cpl)
    19→
    20→# Set policies
    21→cmake_policy(VERSION 3.12)
    22→# Safer library linking
    23→cmake_policy(SET CMP0003 NEW)
    24→# Automatically escape preprocessor definitions
    25→cmake_policy(SET CMP0005 NEW)
    26→# Make syntax problems errors
    27→cmake_policy(SET CMP0010 NEW)
    28→# Input directories must have CMakeLists.txt
    29→cmake_policy(SET CMP0014 NEW)
    30→# Do not interpret quoted or bracketed variables in if statments
    31→cmake_policy(SET CMP0054 NEW)
    32→# Usage of <PackageName>_ROOT variables
    33→cmake_policy(SET CMP0074 NEW)
    34→# Escape RPATH entries in intermediate scripts
    35→cmake_policy(SET CMP0095 NEW)
    36→# Deprecated FindPythonInterp and FindPythonLibs
    37→# CMP0148 is only defined in cmake 3.27+
    38→if(POLICY CMP0148)
    39→    cmake_policy(SET CMP0148 NEW)
    40→endif()
    41→
    42→
    43→# Add local cmake module search path
    44→list(INSERT CMAKE_MODULE_PATH 0 "${PROJECT_SOURCE_DIR}/cmake")
    45→
    46→find_package(PkgConfig)
    47→find_package(CPL "7.2" REQUIRED COMPONENTS cplcore cplui cpldfs cpldrs)
    48→find_package(Python3 REQUIRED COMPONENTS Interpreter Development)
    49→find_package(pybind11 REQUIRED)
    50→
    51→if(NOT DEFINED PYCPL_RECIPE_DIR)
    52→    if(DEFINED ENV{PYCPL_RECIPE_DIR})
    53→        set(PYCPL_RECIPE_DIR $ENV{PYCPL_RECIPE_DIR})
    54→    else()
    55→        get_filename_component(PYCPL_RECIPE_DIR "${CPL_CPLCORE_LIBRARY}" DIRECTORY)
    56→        string(APPEND PYCPL_RECIPE_DIR "/esopipes-plugins")
    57→    endif()
    58→endif()
    59→message(STATUS "Builtin default recipe directory is ${PYCPL_RECIPE_DIR}")
    60→
    61→if(NOT EXISTS ${PYCPL_RECIPE_DIR})
    62→    message(WARNING "Configured default recipe directory '${PYCPL_RECIPE_DIR}' does not yet exist!")
    63→    message(VERBOSE "The above path determines the default cpl.ui.Recipe.recipe_dir, and is used at Run-time.")
    64→endif()
    65→
    66→pybind11_add_module(cpl 
    67→    src/cplcore/array.cpp
    68→    src/cplcore/bivector.cpp
    69→    src/cplcore/coords.cpp
    70→    src/cplcore/error_bindings.cpp
    71→    src/cplcore/error.cpp
    72→    src/cplcore/errorframe.cpp
    73→    src/cplcore/filter_bindings.cpp
    74→    src/cplcore/image_bindings.cpp
    75→    src/cplcore/image.cpp
    76→    src/cplcore/imagelist.cpp
    77→    src/cplcore/io_bindings.cpp
    78→    src/cplcore/mask_bindings.cpp
    79→    src/cplcore/mask.cpp
    80→    src/cplcore/matrix_bindings.cpp
    81→    src/cplcore/matrix.cpp
    82→    src/cplcore/msg_bindings.cpp
    83→    src/cplcore/msg.cpp
    84→    src/cplcore/polynomial_bindings.cpp
    85→    src/cplcore/polynomial.cpp
    86→    src/cplcore/property_bindings.cpp
    87→    src/cplcore/property.cpp
    88→    src/cplcore/propertylist.cpp
    89→    src/cplcore/table_bindings.cpp
    90→    src/cplcore/table.cpp
    91→    src/cplcore/type_bindings.cpp
    92→    src/cplcore/types.cpp
    93→    src/cplcore/vector_bindings.cpp
    94→    src/cplcore/vector.cpp
    95→    src/cpldfs/dfs_bindings.cpp
    96→    src/cpldfs/dfs.cpp
    97→    src/cpldrs/apertures_bindings.cpp
    98→    src/cpldrs/apertures.cpp
    99→    src/cpldrs/detector_bindings.cpp
   100→    src/cpldrs/detector.cpp
   101→    src/cpldrs/fft_bindings.cpp
   102→    src/cpldrs/fft.cpp
   103→    src/cpldrs/fit_bindings.cpp
   104→    src/cpldrs/fit.cpp
   105→    src/cpldrs/geom_img_bindings.cpp
   106→    src/cpldrs/geom_img.cpp
   107→    src/cpldrs/photom_bindings.cpp
   108→    src/cpldrs/photom.cpp
   109→    src/cpldrs/ppm_bindings.cpp
   110→    src/cpldrs/ppm.cpp
   111→    src/cpldrs/wcs_bindings.cpp
   112→    src/cpldrs/wcs.cpp
   113→    src/cpldrs/wlcalib_bindings.cpp
   114→    src/cpldrs/wlcalib.cpp
   115→    src/cplui/frame_bindings.cpp
   116→    src/cplui/frame.cpp
   117→    src/cplui/frameset.cpp
   118→    src/cplui/parameter_bindings.cpp
   119→    src/cplui/parameter.cpp
   120→    src/cplui/parameterlist.cpp
   121→    src/cplui/plugin_bindings.cpp
   122→    src/cplui/plugin.cpp
   123→    src/dump_handler.cpp
   124→    src/pycpl.cpp)
   125→
   126→target_compile_definitions(cpl PRIVATE 
   127→    PYCPL_VERSION=\"${PYCPL_VERSION}\"
   128→    PYCPL_RECIPE_DIR=\"${PYCPL_RECIPE_DIR}\"
   129→    $<$<BOOL:${UNIX}>:_XOPEN_SOURCE=700>
   130→    )
   131→target_compile_options(cpl PRIVATE
   132→    $<$<AND:$<CONFIG:Debug>,$<CXX_COMPILER_ID:GNU>>:-pipe -g3 -ggdb -O0 -rdynamic -fno-inline -fno-builtin -pedantic -Wextra -Wall -W -Wcast-align -Winline -Wmissing-noreturn -Wpointer-arith -Wshadow -Wsign-compare -Wundef -Wunreachable-code -Wwrite-strings -Wmissing-field-initializers -Wmissing-format-attribute>
   133→    $<$<AND:$<CONFIG:Debug>,$<CXX_COMPILER_ID:Clang,AppleClang>>:-pipe -g3 -O0 -fno-inline -fno-builtin -pedantic -Wextra -Wall -W -Wcast-align -Winline -Wimplicit-function-declaration -Wmissing-noreturn -Wincompatible-pointer-types -Wpointer-arith -Wshadow -Wsign-compare -Wundef -Wunreachable-code -Wwrite-strings -Wmissing-field-initializers -Wmissing-format-attribute>
   134→    $<$<AND:$<BOOL:${SANITIZE}>,$<CXX_COMPILER_ID:GNU,Clang,AppleClang>>:-fsanitize=${SANITIZE} -fno-omit-frame-pointer>)
   135→target_include_directories(cpl BEFORE
   136→    PRIVATE "${CMAKE_CURRENT_SOURCE_DIR}/src"
   137→    PUBLIC ${CPL_INCLUDE_DIR})
   138→target_link_options(cpl PRIVATE
   139→    $<$<AND:$<BOOL:${SANITIZE}>,$<CXX_COMPILER_ID:GNU,Clang,AppleClang>>:-fsanitize=${SANITIZE}>)
   140→target_link_libraries(cpl PRIVATE CPL::cpldrs CPL::cpldfs CPL::cplui CPL::cplcore)
   141→
   142→set_target_properties(cpl PROPERTIES
   143→    C_STANDARD 17
   144→    C_STANDARD_REQUIRED YES
   145→    C_EXTENSIONS OFF
   146→    CXX_STANDARD 17
   147→    CXX_STANDARD_REQUIRED YES
   148→    CXX_EXTENSIONS OFF
   149→    SKIP_BUILD_RPATH TRUE)
   150→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

     1→# Process this file with autoconf to produce a configure script.
     2→
     3→AC_INIT([Common Pipeline Library], [7.3.2], [cpl-help@eso.org], [cpl])
     4→AC_PREREQ([2.59])
     5→LT_PREREQ([2.2.6])
     6→
     7→AC_CONFIG_SRCDIR([cpl.h])
     8→AC_CONFIG_AUX_DIR([admin])
     9→AC_CONFIG_MACRO_DIR([m4])
    10→AC_CONFIG_HEADERS([config.h])
    11→LT_CONFIG_LTDL_DIR([libltdl])
    12→
    13→AC_CANONICAL_BUILD
    14→
    15→AM_INIT_AUTOMAKE
    16→m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES])
    17→
    18→AM_MAINTAINER_MODE
    19→
    20→LT_INIT([disable-static])
    21→AC_SUBST(LIBTOOL_DEPS)
    22→
    23→LTDL_INIT([subproject], [convenience])
    24→
    25→CPL_SET_PREFIX
    26→
    27→# Immediately before every release do:
    28→#-------------------------------------
    29→#   if (the interface is totally unchanged from previous release)
    30→#       REVISION++;
    31→#   else {
    32→#       /* interfaces have been added, removed or changed */
    33→#       REVISION = 0;
    34→#       CURRENT++;
    35→#       if (any interfaces have been _added_ since last release)
    36→#           AGE++;
    37→#       if (any interfaces have been _removed_ or incompatibly changed)
    38→#           AGE = 0;
    39→#   }
    40→
    41→
    42→# Order of arguments: VERSION, CURRENT, REVISION, AGE
    43→CPL_CONFIG_VERSION([$VERSION], [29], [2], [3]) 
    44→
    45→# Checks for programs.
    46→AC_PROG_CC
    47→AC_PROG_CC_C_O
    48→
    49→ESO_PROG_CC_FLAG([std=c99], [
    50→                               CPPFLAGS="$CPPFLAGS -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500"
    51→                               CFLAGS="$CFLAGS -std=c99"
    52→                            ])
    53→ESO_PROG_CC_FLAG([fno-common], [CFLAGS="$CFLAGS -fno-common"])
    54→
    55→ESO_ENABLE_DEBUG(no)
    56→ESO_ENABLE_STRICT(no)
    57→ESO_ENABLE_PROFILE(no)
    58→
    59→
    60→ESO_CHECK_DOCTOOLS
    61→
    62→CPL_PATH_JAVA
    63→
    64→CPL_ENABLE_THREADS(yes)
    65→
    66→# Checks for libraries.
    67→AC_CHECK_LIB(socket, socket, [LIBS="$LIBS -lsocket"])
    68→AC_CHECK_LIB(nsl, inet_ntoa, [LIBS="$LIBS -lnsl"])
    69→
    70→CPL_CONFIG_CEXT
    71→CPL_CONFIG_CFITSIO([3.35])
    72→CPL_CHECK_WCS([4.16])
    73→CPL_CHECK_FFTW([3.3.3])
    74→
    75→# Checks for header files.
    76→AC_HEADER_TIOCGWINSZ
    77→AC_CHECK_HEADERS([fcntl.h stdlib.h string.h stropts.h sys/ioctl.h \
    78→                  sys/stat.h sys/times.h sys/time.h sys/types.h \
    79→                  termios.h termio.h unistd.h time.h locale.h xlocale.h])
    80→
    81→
    82→# Checks for typedefs, structures, and compiler characteristics.
    83→AC_C_CONST
    84→AC_C_INLINE
    85→AC_C_BIGENDIAN
    86→
    87→AC_TYPE_LONG_DOUBLE_WIDER
    88→
    89→CPL_CHECK_VA_ARGS
    90→CPL_CHECK_COMPLEX
    91→
    92→AC_CHECK_SIZEOF(size_t)
    93→AC_CHECK_SIZEOF(void *)
    94→AC_CHECK_SIZEOF(double)
    95→AC_SYS_LARGEFILE
    96→
    97→
    98→# Checks for library functions.
    99→AC_FUNC_MALLOC
   100→AC_FUNC_VPRINTF

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

total 132
drwxr-xr-x 5 root root  4096 Nov 17 11:34 .
drwxr-xr-x 8 root root  4096 Nov 17 11:34 ..
-rw-r--r-- 1 root root  8275 Nov 17 11:34 .clang-format
-rw-r--r-- 1 root root 17892 Nov 17 11:34 CHANGELOG.md
-rw-r--r-- 1 root root  5763 Nov 17 11:34 CMakeLists.txt
-rw-r--r-- 1 root root 35149 Nov 17 11:34 LICENSE
-rw-r--r-- 1 root root   355 Nov 17 11:34 MANIFEST.in
-rw-r--r-- 1 root root 19409 Nov 17 11:34 PKG-INFO
-rw-r--r-- 1 root root 18065 Nov 17 11:34 README.md
drwxr-xr-x 2 root root  4096 Nov 17 11:34 cmake
-rw-r--r-- 1 root root   117 Nov 17 11:34 pyproject.toml
-rw-r--r-- 1 root root    53 Nov 17 11:34 pytest.ini
-rw-r--r-- 1 root root  1122 Nov 17 11:34 setup.cfg
-rw-r--r-- 1 root root  4649 Nov 17 11:34 setup.py
drwxr-xr-x 6 root root  4096 Nov 17 11:34 src
drwxr-xr-x 7 root root  4096 Nov 17 11:34 tests

total 18
drwxr-xr-x 2 root root 4096 Nov 17 11:34 .
drwxr-xr-x 5 root root 4096 Nov 17 11:34 ..
-rw-r--r-- 1 root root 9298 Nov 17 11:34 FindCPL.cmake

     1→# This file is part of PyCPL the ESO CPL Python language bindings
     2→# Copyright (C) 2020-2024 European Southern Observatory
     3→#
     4→# This program is free software: you can redistribute it and/or modify
     5→# it under the terms of the GNU General Public License as published by
     6→# the Free Software Foundation, either version 3 of the License, or
     7→# (at your option) any later version.
     8→#
     9→# This program is distributed in the hope that it will be useful,
    10→# but WITHOUT ANY WARRANTY; without even the implied warranty of
    11→# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    12→# GNU General Public License for more details.
    13→#
    14→# You should have received a copy of the GNU General Public License
    15→# along with this program.  If not, see <http://www.gnu.org/licenses/>.
    16→
    17→#[=======================================================================[.rst:
    18→FindCPL
    19→-------
    20→
    21→Find the Common Pipeline Library headers and libraries. The module can be
    22→configured using the following variables:
    23→
    24→    CPL_ROOT:    Location where CPL is installed
    25→
    26→or the corresponding environment variable CPL_ROOT.
    27→
    28→The module also takes into account the environment variable CPLDIR.
    29→If it is set it should point to the location of the CPL installation.
    30→Using the environment variable is equivalent to setting the option
    31→CPL_ROOT. However, if both, CPL_ROOT and CPLDIR, are set the CPL_ROOT
    32→variable setting takes precedence.
    33→
    34→Imported Targets
    35→^^^^^^^^^^^^^^^^
    36→
    37→This module provides the following imported targets, if found:
    38→
    39→``CPL::cplcore``
    40→  The cplcore library component.
    41→
    42→``CPL::cplui``
    43→  The cplui library component.
    44→
    45→``CPL::cpldfs``
    46→  The cpldfs library component.
    47→
    48→``CPL::cpldrs``
    49→  The cpldrs library component.
    50→
    51→``CPL::cplgasgano``
    52→  The cplgasgano library component.
    53→
    54→Result Variables
    55→^^^^^^^^^^^^^^^^
    56→
    57→This module defines the following variables:
    58→
    59→``CPL_FOUND``
    60→  "True" if both, CPL header files and the CPL libraries were found.
    61→
    62→``CPL_INCLUDE_DIR``
    63→  Path where the CPL header files are located.
    64→
    65→``CPL_CPLCORE_LIBRARY``
    66→  Path where the cplcore library is located.
    67→
    68→``CPL_CPLUI_LIBRARY``
    69→  Path where the cplui library is located.
    70→
    71→``CPL_CPLDFS_LIBRARY``
    72→  Path where the cpldfs library is located.
    73→
    74→``CPL_CPLDRS_LIBRARY``
    75→  Path where the cpldrs library is located.
    76→
    77→``CPL_CPLGASGANO_LIBRARY``
    78→  Path where the cplgasgano library is located.
    79→
    80→``CPL_VERSION``
    81→  Full version string of the CPL libraries.
    82→
    83→``CPL_VERSION_MAJOR``
    84→  Major version number of the CPL libraries.
    85→
    86→``CPL_VERSION_MINOR``
    87→  Minor version number of the CPL libraries.
    88→
    89→``CPL_VERSION_PATCH``
    90→  Patch version number of the CPL libraries.
    91→
    92→Cache Variables
    93→^^^^^^^^^^^^^^^
    94→
    95→The following cache variables may also be set:
    96→
    97→``CPL_INCLUDE_DIR``
    98→  Path where the CPL header files are located.
    99→
   100→``CPL_CPLCORE_LIBRARY``
   101→  Path where the cplcore library is located.
   102→
   103→``CPL_CPLUI_LIBRARY``
   104→  Path where the cplui library is located.
   105→
   106→``CPL_CPLDFS_LIBRARY``
   107→  Path where the cpldfs library is located.
   108→
   109→``CPL_CPLDRS_LIBRARY``
   110→  Path where the cpldrs library is located.
   111→
   112→``CPL_CPLGASGANO_LIBRARY``
   113→  Path where the cplgasgano library is located.
   114→#]=======================================================================]
   115→
   116→cmake_policy(VERSION 3.12)
   117→
   118→include(FindPackageHandleStandardArgs)
   119→
   120→if(NOT PKG_CONFIG_FOUND)
   121→    find_package(PkgConfig QUIET)
   122→endif()
   123→
   124→# For backwards compatibility also honor the CPLDIR environment variable.
   125→if(NOT CPL_ROOT AND (NOT "$ENV{CPLDIR}" STREQUAL ""))
   126→    set(CPL_ROOT "$ENV{CPLDIR}")
   127→endif()
   128→
   129→if(PKG_CONFIG_FOUND)
   130→    pkg_check_modules(PC_CPL QUIET IMPORTED_TARGET GLOBAL
   131→                      cplcore
   132→                      cplui
   133→                      cpldfs
   134→                      cpldrs
   135→                      cplgasgano)
   136→    if(PC_CPL_FOUND)
   137→        set(CPL_VERSION ${PC_CPL_VERSION})
   138→    endif()
   139→endif()
   140→
   141→# Search for the header files
   142→find_path(CPL_INCLUDE_DIR
   143→          NAMES cpl.h
   144→          PATH_SUFFIXES cpl
   145→          HINTS ${CPL_ROOT}/include ${PC_CPL_INCLUDE_DIRS})
   146→mark_as_advanced(CPL_INCLUDE_DIR)
   147→
   148→# Search for the component libraries. Also look into the 'lib64'
   149→# directoy when searching for the libraries.
   150→set(FIND_LIBRARY_USE_LIB64_PATHS True)
   151→find_library(CPL_CPLCORE_LIBRARY
   152→             NAMES cplcore
   153→             HINTS ${CPL_ROOT}/lib ${PC_CPL_LIBRARY_DIRS})
   154→mark_as_advanced(CPL_CPLCORE_LIBRARY)
   155→if(CPL_CPLCORE_LIBRARY)
   156→    set(CPL_cplcore_FOUND True)
   157→endif()
   158→
   159→find_library(CPL_CPLUI_LIBRARY
   160→             NAMES cplui
   161→             HINTS ${CPL_ROOT}/lib ${PC_CPL_LIBRARY_DIRS})
   162→mark_as_advanced(CPL_CPLUI_LIBRARY)
   163→if(CPL_CPLUI_LIBRARY)
   164→    set(CPL_cplui_FOUND True)
   165→endif()
   166→
   167→find_library(CPL_CPLDFS_LIBRARY
   168→             NAMES cpldfs
   169→             HINTS ${CPL_ROOT}/lib ${PC_CPL_LIBRARY_DIRS})
   170→mark_as_advanced(CPL_CPLDFS_LIBRARY)
   171→if(CPL_CPLDFS_LIBRARY)
   172→    set(CPL_cpldfs_FOUND True)
   173→endif()
   174→
   175→find_library(CPL_CPLDRS_LIBRARY
   176→             NAMES cpldrs
   177→             HINTS ${CPL_ROOT}/lib ${PC_CPL_LIBRARY_DIRS})
   178→mark_as_advanced(CPL_CPLDRS_LIBRARY)
   179→if(CPL_CPLDRS_LIBRARY)
   180→    set(CPL_cpldrs_FOUND True)
   181→endif()
   182→
   183→find_library(CPL_CPLGASGANO_LIBRARY
   184→             NAMES cplgasgano
   185→             HINTS ${CPL_ROOT}/lib ${PC_CPL_LIBRARY_DIRS})
   186→mark_as_advanced(CPL_CPLGASGANO_LIBRARY)
   187→if(CPL_CPLGASGANO_LIBRARY)
   188→    set(CPL_cplgasgano_FOUND True)
   189→endif()
   190→
   191→# Determine the library version from the header files if
   192→# it is not yet known. Potentially this has already been 
   193→# set by "pkg-config".
   194→if(CPL_INCLUDE_DIR AND NOT CPL_VERSION)
   195→    if(EXISTS ${CPL_INCLUDE_DIR}/cpl_version.h)
   196→        file(STRINGS "${CPL_INCLUDE_DIR}/cpl_version.h"
   197→             cpl_version
   198→             REGEX "^[\t ]*#define[\t ]+CPL_VERSION_STRING[\t ]+\"[0-9]+\.[0-9]+.*\"")
   199→        string(REGEX REPLACE
   200→               "^[\t ]*#define[\t ]+CPL_VERSION_STRING[\t ]+\"([0-9]+\.[0-9][^a-z \"]*).*" "\\1"
   201→               CPL_VERSION ${cpl_version})
   202→        unset(cpl_version)
   203→    endif()
   204→endif()
   205→
   206→# Decompose the version string into major, minor and patch version numbers
   207→set(cpl_version_regex "([0-9]+)\.([0-9]+)(\.([0-9]+))?.*")
   208→string(REGEX MATCH ${cpl_version_regex}
   209→       cpl_version_string "${CPL_VERSION}")
   210→set(CPL_VERSION_MAJOR ${CMAKE_MATCH_1})
   211→set(CPL_VERSION_MINOR ${CMAKE_MATCH_2})
   212→if(NOT "${CMAKE_MATCH_4}" STREQUAL "")
   213→    set(CPL_VERSION_PATCH ${CMAKE_MATCH_4})
   214→endif()
   215→unset(cpl_version_string)
   216→unset(cpl_version_regex)
   217→
   218→find_package_handle_standard_args(CPL
   219→                                  REQUIRED_VARS CPL_INCLUDE_DIR
   220→                                  VERSION_VAR CPL_VERSION
   221→                                  HANDLE_COMPONENTS)
   222→
   223→if(CPL_FOUND)
   224→    if(NOT TARGET CPL::cplcore)
   225→        add_library(CPL::cplcore UNKNOWN IMPORTED)
   226→        set_target_properties(CPL::cplcore PROPERTIES
   227→                              INTERFACE_INCLUDE_DIRECTORIES "${CPL_INCLUDE_DIR}")
   228→        if(EXISTS "${CPL_CPLCORE_LIBRARY}")
   229→            set_target_properties(CPL::cplcore PROPERTIES
   230→                                  IMPORTED_LINK_INTERFACE_LANGUAGES "C"
   231→                                  IMPORTED_LOCATION ${CPL_CPLCORE_LIBRARY})
   232→        endif()
   233→    endif()
   234→
   235→    if(NOT TARGET CPL::cplui)
   236→        add_library(CPL::cplui UNKNOWN IMPORTED)
   237→        set_target_properties(CPL::cplui PROPERTIES
   238→                              INTERFACE_INCLUDE_DIRECTORIES "${CPL_INCLUDE_DIR}")
   239→        if(EXISTS "${CPL_CPLUI_LIBRARY}")
   240→            set_target_properties(CPL::cplui PROPERTIES
   241→                                  IMPORTED_LINK_INTERFACE_LANGUAGES "C"
   242→                                  IMPORTED_LOCATION ${CPL_CPLUI_LIBRARY})
   243→            target_link_libraries(CPL::cplui INTERFACE CPL::cplcore)
   244→        endif()
   245→    endif()
   246→
   247→    if(NOT TARGET CPL::cpldfs)
   248→        add_library(CPL::cpldfs UNKNOWN IMPORTED)
   249→        set_target_properties(CPL::cpldfs PROPERTIES
   250→                              INTERFACE_INCLUDE_DIRECTORIES "${CPL_INCLUDE_DIR}")
   251→        if(EXISTS "${CPL_CPLDFS_LIBRARY}")
   252→            set_target_properties(CPL::cpldfs PROPERTIES
   253→                                  IMPORTED_LINK_INTERFACE_LANGUAGES "C"
   254→                                  IMPORTED_LOCATION ${CPL_CPLDFS_LIBRARY})
   255→            target_link_libraries(CPL::cpldfs INTERFACE CPL::cplcore)
   256→        endif()
   257→    endif()
   258→
   259→    if(NOT TARGET CPL::cpldrs)
   260→        add_library(CPL::cpldrs UNKNOWN IMPORTED)
   261→        set_target_properties(CPL::cpldrs PROPERTIES
   262→                              INTERFACE_INCLUDE_DIRECTORIES "${CPL_INCLUDE_DIR}")
   263→        if(EXISTS "${CPL_CPLDRS_LIBRARY}")
   264→            set_target_properties(CPL::cpldrs PROPERTIES
   265→                                  IMPORTED_LINK_INTERFACE_LANGUAGES "C"
   266→                                  IMPORTED_LOCATION ${CPL_CPLDRS_LIBRARY})
   267→            target_link_libraries(CPL::cpldrs INTERFACE CPL::cplcore)
   268→        endif()
   269→    endif()
   270→
   271→    if(NOT TARGET CPL::cplgasgano)
   272→        add_library(CPL::cplgasgano UNKNOWN IMPORTED)
   273→        set_target_properties(CPL::cplgasgano PROPERTIES
   274→                              INTERFACE_INCLUDE_DIRECTORIES "${CPL_INCLUDE_DIR}")
   275→        if(EXISTS "${CPL_CPLGASGANO_LIBRARY}")
   276→            set_target_properties(CPL::cplgasgano PROPERTIES
   277→                                  IMPORTED_LINK_INTERFACE_LANGUAGES "C"
   278→                                  IMPORTED_LOCATION ${CPL_CPLGASGANO_LIBRARY})
   279→            target_link_libraries(CPL::cplgasgano INTERFACE CPL::cpldfs CPL::cplcore)
   280→        endif()
   281→    endif()
   282→endif()
   283→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

CMakeLists.txt
Makefile.am
Makefile.in
configure
configure.ac

CMakeLists.txt
Makefile.am
Makefile.in
configure
configure.ac

Makefile.am
Makefile.in
configure
configure.ac

total 24
drwxr-xr-x  6 root root 4096 Nov 17 11:36 .
drwxr-xr-x  6 root root 4096 Nov 17 11:36 ..
drwxr-xr-x  7 root root 4096 Nov 17 11:34 cfitsio-4.6.2
drwxr-xr-x 11 root root 4096 Nov 17 11:34 cpl-7.3.2
drwxr-xr-x 16 root root 4096 Nov 17 11:34 fftw-3.3.10
drwxr-xr-x  8 root root 4096 Nov 17 11:34 wcslib-8.2.2

     1→# This file is part of PyCPL the ESO CPL Python language bindings
     2→# Copyright (C) 2020-2024 European Southern Observatory
     3→#
     4→# This program is free software: you can redistribute it and/or modify
     5→# it under the terms of the GNU General Public License as published by
     6→# the Free Software Foundation, either version 3 of the License, or
     7→# (at your option) any later version.
     8→#
     9→# This program is distributed in the hope that it will be useful,
    10→# but WITHOUT ANY WARRANTY; without even the implied warranty of
    11→# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    12→# GNU General Public License for more details.
    13→#
    14→# You should have received a copy of the GNU General Public License
    15→# along with this program.  If not, see <http://www.gnu.org/licenses/>.
    16→
    17→import os
    18→import sys
    19→import subprocess
    20→from pathlib import Path
    21→
    22→import pybind11
    23→
    24→from setuptools import setup, Extension
    25→from setuptools.command.build_ext import build_ext
    26→
    27→
    28→class CMakeExtension(Extension):
    29→    def __init__(self, name: str, sourcedir: str = "") -> None:
    30→        super().__init__(name, sources=[])
    31→        self.sourcedir = os.fspath(Path(sourcedir).resolve())
    32→
    33→
    34→class CMakeBuildExt(build_ext):
    35→    def run(self) -> None:
    36→        try:
    37→            _ = subprocess.check_output(["cmake", "--version"])
    38→        except OSError as e:
    39→            raise RuntimeError(
    40→                "CMake must be installed to build the following extensions: "
    41→                + ", ".join(e.name for e in self.extensions)
    42→            ) from e
    43→        for ext in self.extensions:
    44→            self.build_extension(ext)
    45→
    46→    def build_extension(self, ext: CMakeExtension) -> None:
    47→        # CAUTION: Using extdir requires trailing slash for auto-detection &
    48→        # inclusion of auxiliary "native" libs
    49→        #
    50→        # Must be in this form due to bug in .resolve() only fixed in
    51→        # Python 3.10+
    52→        ext_fullpath = Path.cwd() / self.get_ext_fullpath(ext.name)
    53→        extdir = ext_fullpath.parent.resolve()
    54→
    55→        debug = (
    56→            int(os.environ.get("PYCPL_BUILD_DEBUG", 0))
    57→            if self.debug is None
    58→            else self.debug
    59→        )
    60→        sanitize = os.environ.get("PYCPL_BUILD_SANITIZE", "")
    61→        # Preferably the namespace protected variable should be used,
    62→        # however the environment variable VERBOSE is checked and used
    63→        # by cmake and its generated scripts. So we are conservative here
    64→        # in order to have a consistent behavior.
    65→        verbose = int(os.environ.get("PYCPL_BUILD_VERBOSE", 0)) or int(
    66→            os.environ.get("VERBOSE", 0)
    67→        )
    68→
    69→        cmake_args = []
    70→        build_args = []
    71→
    72→        if verbose:
    73→            cmake_args += ["-DCMAKE_VERBOSE_MAKEFILE=TRUE"]
    74→
    75→        if sanitize in ["address", "leak"]:
    76→            debug = 1
    77→            cmake_args += [f"-DSANITIZE:STRING={sanitize}"]
    78→
    79→        cfg = "Debug" if debug else "Release"
    80→        cmake_args += [
    81→            f"-DCMAKE_BUILD_TYPE={cfg}",  # not used on MSVC, but no harm
    82→            f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}{os.sep}",
    83→            f"-DPython3_EXECUTABLE={sys.executable}",
    84→        ]
    85→
    86→        if "CMAKE_ARGS" in os.environ:
    87→            cmake_args += [item for item in os.environ["CMAKE_ARGS"].split(" ") if item]
    88→
    89→        cmake_args += [f"-DPYCPL_VERSION={self.distribution.get_version()}"]
    90→
    91→        cmake_args += ["-Dpybind11_DIR:PATH=" + pybind11.get_cmake_dir()]
    92→
    93→        cpldir = os.environ.get("CPLDIR", None)
    94→        if cpldir is not None:
    95→            cmake_args += [f"-DCPL_ROOT:PATH={Path(cpldir).resolve()}"]
    96→        recipedir = os.environ.get("PYCPL_RECIPE_DIR", None)
    97→        if recipedir is not None:
    98→            cmake_args += [f"-DPYCPL_RECIPE_DIR:PATH={Path(recipedir).resolve()}"]
    99→
   100→        # Set CMAKE_BUILD_PARALLEL_LEVEL to control the parallel build level
   101→        # across all generators.
   102→        if "CMAKE_BUILD_PARALLEL_LEVEL" not in os.environ:
   103→            # self.parallel is a Python 3 only way to set parallel jobs by hand
   104→            # using -j in the build_ext call, not supported by pip or PyPA-build.
   105→            if hasattr(self, "parallel") and self.parallel:
   106→                # CMake 3.12+ only.
   107→                build_args += [f"-j{self.parallel}"]
   108→
   109→        build_temp = Path(self.build_temp) / ext.name
   110→        if not build_temp.exists():
   111→            build_temp.mkdir(parents=True)
   112→
   113→        subprocess.run(
   114→            ["cmake", ext.sourcedir, *cmake_args], cwd=build_temp, check=True
   115→        )
   116→        subprocess.run(
   117→            ["cmake", "--build", ".", *build_args], cwd=build_temp, check=True
   118→        )
   119→
   120→
   121→setup(
   122→    ext_modules=[CMakeExtension("cpl")],
   123→    cmdclass={"build_ext": CMakeBuildExt},
   124→)
   125→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 23, in <module>
    import pybind11
ModuleNotFoundError: No module named 'pybind11'

Collecting pybind11
  Downloading pybind11-3.0.1-py3-none-any.whl.metadata (10.0 kB)
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (68.1.2)
Downloading pybind11-3.0.1-py3-none-any.whl (293 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 293.6/293.6 kB 6.5 MB/s eta 0:00:00
Installing collected packages: pybind11
Successfully installed pybind11-3.0.1
WARNING: The directory '/root/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag.
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv

-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/libcfitsio.so
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/fitsio.h
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/fitsio2.h
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/longnam.h
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/cfitsio_export.h
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/cfitsio/cfitsioTargets.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/cfitsio/cfitsioTargets-release.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/cfitsio/cfitsioConfig.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/cfitsio/cfitsioConfigVersion.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/cfitsio.pc
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/cookbook
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/cookbook" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fpack
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fpack" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/funpack
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/funpack" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fitscopy
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fitscopy" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fitsverify
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/fitsverify" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/imcopy
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/imcopy" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/speed
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/speed" to ""
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/smem
-- Set non-toolchain portion of runtime path of "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/bin/smem" to ""
>>> cfitsio built successfully

>>> Building fftw...
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- The C compiler identification is GNU 13.3.0
-- The CXX compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for alloca.h

[ 93%] Building C object CMakeFiles/bench.dir/libbench2/after-ccopy-to.c.o
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[ 98%] Building C object CMakeFiles/bench.dir/libbench2/util.c.o
[ 98%] Building C object CMakeFiles/bench.dir/libbench2/verify-dft.c.o
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[100%] Building C object CMakeFiles/bench.dir/tests/fftw-bench.c.o
>>> fftw built successfully
>>> Building wcslib...

>>> fftw built successfully
>>> Building wcslib...
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', '-j16']' returned non-zero exit status 2.

-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/fftw3l.f03
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/fftw3q.f03
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/fftw3.f03
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/fftw3.pc
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/fftw3/FFTW3Config.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/fftw3/FFTW3ConfigVersion.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/fftw3/FFTW3LibraryDepends.cmake
-- Installing: /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/cmake/fftw3/FFTW3LibraryDepends-release.cmake
>>> fftw built successfully

>>> Building wcslib...
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for flex... no
configure: WARNING: Flex version 2.6.0 or later does not appear to be
           available, will use pre-generated sources.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking for an ANSI C-conforming const... yes

config.status: creating wcsconfig.h
config.status: creating wcsconfig_f77.h
config.status: creating wcsconfig_tests.h
config.status: creating wcsconfig_utils.h
make: *** No targets specified and no makefile found.  Stop.
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 261, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 81, in build_dependencies
    self._build_wcslib(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 152, in _build_wcslib
    subprocess.run(["make", f"-j{njobs}"], cwd=build_subdir, check=True)
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', '-j16']' returned non-zero exit status 2.

   130→
   131→    def _build_wcslib(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   132→        """Build wcslib library"""
   133→        print("\n>>> Building wcslib...")
   134→        src_dir = vendor_dir / "wcslib-8.2.2"
   135→        build_subdir = build_dir / "wcslib-build"
   136→        build_subdir.mkdir(parents=True, exist_ok=True)
   137→
   138→        # wcslib uses autoconf
   139→        env = os.environ.copy()
   140→        env["CFITSIOLIB"] = str(install_dir / "lib")
   141→        env["CFITSIOINC"] = str(install_dir / "include")
   142→
   143→        subprocess.run([
   144→            str(src_dir / "configure"),
   145→            f"--prefix={install_dir}",
   146→            "--without-pgplot",
   147→            "--disable-fortran",
   148→            f"--with-cfitsiolib={install_dir / 'lib'}",
   149→            f"--with-cfitsioinc={install_dir / 'include'}",
   150→        ], cwd=build_subdir, env=env, check=True)
   151→
   152→        subprocess.run(["make", f"-j{njobs}"], cwd=build_subdir, check=True)
   153→        subprocess.run(["make", "install"], cwd=build_subdir, check=True)
   154→        print(">>> wcslib built successfully")
   155→
   156→    def _build_cpl(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   157→        """Build CPL library"""
   158→        print("\n>>> Building CPL...")
   159→        src_dir = vendor_dir / "cpl-7.3.2"
   160→        build_subdir = build_dir / "cpl-build"
   161→        build_subdir.mkdir(parents=True, exist_ok=True)
   162→
   163→        # CPL uses autoconf and needs to find the dependencies
   164→        env = os.environ.copy()
   165→        env["PKG_CONFIG_PATH"] = str(install_dir / "lib" / "pkgconfig")
   166→        env["CFITSIO_CFLAGS"] = f"-I{install_dir / 'include'}"
   167→        env["CFITSIO_LIBS"] = f"-L{install_dir / 'lib'} -lcfitsio"
   168→        env["FFTW3_CFLAGS"] = f"-I{install_dir / 'include'}"
   169→        env["FFTW3_LIBS"] = f"-L{install_dir / 'lib'} -lfftw3"
   170→        env["WCSLIB_CFLAGS"] = f"-I{install_dir / 'include'} -I{install_dir / 'include' / 'wcslib'}"
   171→        env["WCSLIB_LIBS"] = f"-L{install_dir / 'lib'} -lwcs"
   172→        env["CPPFLAGS"] = f"-I{install_dir / 'include'}"
   173→        env["LDFLAGS"] = f"-L{install_dir / 'lib'}"
   174→
   175→        subprocess.run([
   176→            str(src_dir / "configure"),
   177→            f"--prefix={install_dir}",
   178→            "--disable-static",
   179→            "--enable-shared",
   180→        ], cwd=build_subdir, env=env, check=True)
   181→
   182→        subprocess.run(["make", f"-j{njobs}"], cwd=build_subdir, check=True)
   183→        subprocess.run(["make", "install"], cwd=build_subdir, check=True)
   184→        print(">>> CPL built successfully")
   185→
   186→    def build_extension(self, ext: CMakeExtension) -> None:
   187→        # CAUTION: Using extdir requires trailing slash for auto-detection &
   188→        # inclusion of auxiliary "native" libs
   189→        #
   190→        # Must be in this form due to bug in .resolve() only fixed in
   191→        # Python 3.10+
   192→        ext_fullpath = Path.cwd() / self.get_ext_fullpath(ext.name)
   193→        extdir = ext_fullpath.parent.resolve()
   194→
   195→        debug = (
   196→            int(os.environ.get("PYCPL_BUILD_DEBUG", 0))
   197→            if self.debug is None
   198→            else self.debug
   199→        )
   200→        sanitize = os.environ.get("PYCPL_BUILD_SANITIZE", "")
   201→        # Preferably the namespace protected variable should be used,
   202→        # however the environment variable VERBOSE is checked and used
   203→        # by cmake and its generated scripts. So we are conservative here
   204→        # in order to have a consistent behavior.
   205→        verbose = int(os.environ.get("PYCPL_BUILD_VERBOSE", 0)) or int(
   206→            os.environ.get("VERBOSE", 0)
   207→        )
   208→
   209→        cmake_args = []
   210→        build_args = []
   211→
   212→        if verbose:
   213→            cmake_args += ["-DCMAKE_VERBOSE_MAKEFILE=TRUE"]
   214→
   215→        if sanitize in ["address", "leak"]:
   216→            debug = 1
   217→            cmake_args += [f"-DSANITIZE:STRING={sanitize}"]
   218→
   219→        cfg = "Debug" if debug else "Release"
   220→        cmake_args += [
   221→            f"-DCMAKE_BUILD_TYPE={cfg}",  # not used on MSVC, but no harm
   222→            f"-DCMAKE_LIBRARY_OUTPUT_DIRECTORY={extdir}{os.sep}",
   223→            f"-DPython3_EXECUTABLE={sys.executable}",
   224→        ]
   225→
   226→        if "CMAKE_ARGS" in os.environ:
   227→            cmake_args += [item for item in os.environ["CMAKE_ARGS"].split(" ") if item]
   228→
   229→        cmake_args += [f"-DPYCPL_VERSION={self.distribution.get_version()}"]
   230→
   231→        cmake_args += ["-Dpybind11_DIR:PATH=" + pybind11.get_cmake_dir()]
   232→
   233→        cpldir = os.environ.get("CPLDIR", None)
   234→        if cpldir is not None:
   235→            cmake_args += [f"-DCPL_ROOT:PATH={Path(cpldir).resolve()}"]
   236→        recipedir = os.environ.get("PYCPL_RECIPE_DIR", None)
   237→        if recipedir is not None:
   238→            cmake_args += [f"-DPYCPL_RECIPE_DIR:PATH={Path(recipedir).resolve()}"]
   239→
   240→        # Set CMAKE_BUILD_PARALLEL_LEVEL to control the parallel build level
   241→        # across all generators.
   242→        if "CMAKE_BUILD_PARALLEL_LEVEL" not in os.environ:
   243→            # self.parallel is a Python 3 only way to set parallel jobs by hand
   244→            # using -j in the build_ext call, not supported by pip or PyPA-build.
   245→            if hasattr(self, "parallel") and self.parallel:
   246→                # CMake 3.12+ only.
   247→                build_args += [f"-j{self.parallel}"]
   248→
   249→        build_temp = Path(self.build_temp) / ext.name
   250→        if not build_temp.exists():
   251→            build_temp.mkdir(parents=True)
   252→
   253→        subprocess.run(
   254→            ["cmake", ext.sourcedir, *cmake_args], cwd=build_temp, check=True
   255→        )
   256→        subprocess.run(
   257→            ["cmake", "--build", ".", *build_args], cwd=build_temp, check=True
   258→        )
   259→
   260→
   261→setup(
   262→    ext_modules=[CMakeExtension("cpl")],
   263→    cmdclass={"build_ext": CMakeBuildExt},
   264→)
   265→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

[ 98%] Building C object CMakeFiles/bench.dir/libbench2/verify-dft.c.o
[ 99%] Building C object CMakeFiles/bench.dir/libbench2/verify-lib.c.o
[ 99%] Building C object CMakeFiles/bench.dir/libbench2/verify-r2r.c.o
[ 99%] Building C object CMakeFiles/bench.dir/libbench2/verify-rdft2.c.o
[ 99%] Building C object CMakeFiles/bench.dir/libbench2/verify.c.o
[ 99%] Building C object CMakeFiles/bench.dir/libbench2/zero.c.o
[100%] Building C object CMakeFiles/bench.dir/tests/bench.c.o
[100%] Building C object CMakeFiles/bench.dir/tests/hook.c.o
[100%] Building C object CMakeFiles/bench.dir/tests/fftw-bench.c.o
>>> fftw built successfully
>>> Building wcslib...

make[3]: *** [GNUmakefile:146: fitshdr.c] Error 1
make[3]: *** [GNUmakefile:146: wcsbth.c] Error 1
make[3]: *** [GNUmakefile:147: wcspih.c] Error 1
make[3]: *** [GNUmakefile:148: wcsulex.c] Error 1
make[3]: *** [GNUmakefile:148: wcsutrn.c] Error 1
make[3]: Target 'lib' not remade because of errors.
make[2]: *** [GNUmakefile:121: ../C/libwcs-8.2.2.a] Error 2
collect2: error: ld returned 1 exit status
make[2]: *** [GNUmakefile:84: HPXcvt] Error 1
make[2]: Target 'build' not remade because of errors.
make[1]: [GNUmakefile:51: build] Error 2 (ignored)
make[1]: *** [GNUmakefile:148: fitshdr.c] Error 1
make[1]: *** [GNUmakefile:148: wcsbth.c] Error 1
make[1]: *** [GNUmakefile:148: wcspih.c] Error 1
make[1]: *** [GNUmakefile:148: wcsulex.c] Error 1
make[1]: *** [GNUmakefile:148: wcsutrn.c] Error 1
make[1]: Target 'install' not remade because of errors.
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:84: HPXcvt] Error 1
make[2]: *** [GNUmakefile:148: fitshdr.c] Error 1
make[2]: *** [GNUmakefile:148: wcsbth.c] Error 1
make[2]: *** [GNUmakefile:148: wcspih.c] Error 1
make[2]: *** [GNUmakefile:148: wcsulex.c] Error 1
make[2]: *** [GNUmakefile:148: wcsutrn.c] Error 1
make[2]: Target 'lib' not remade because of errors.
make[1]: *** [GNUmakefile:121: ../C/libwcs-8.2.2.a] Error 2
make[1]: Target 'install' not remade because of errors.
make: *** [GNUmakefile:83: install] Error 2
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', 'install']' returned non-zero exit status 2.

For code development...
  FLAVOUR     := default
  MODE        := 
  VALGRIND    := 
  EXTRA_CLEAN := 



Mon 2025/11/17 11:43:12 +0000, executing on 
    with default FLAVOUR.
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'

cp flexed/fitshdr.c .
cp: cannot stat 'flexed/fitshdr.c': No such file or directory
make[2]: *** [GNUmakefile:148: fitshdr.c] Error 1
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'

cp flexed/wcsbth.c .
cp: cannot stat 'flexed/wcsbth.c': No such file or directory
make[2]: *** [GNUmakefile:148: wcsbth.c] Error 1
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'

cp flexed/wcspih.c .
cp: cannot stat 'flexed/wcspih.c': No such file or directory
make[2]: *** [GNUmakefile:148: wcspih.c] Error 1
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'

cp flexed/wcsulex.c .
cp: cannot stat 'flexed/wcsulex.c': No such file or directory
make[2]: *** [GNUmakefile:148: wcsulex.c] Error 1
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'

cp flexed/wcsutrn.c .
cp: cannot stat 'flexed/wcsutrn.c': No such file or directory
make[2]: *** [GNUmakefile:148: wcsutrn.c] Error 1
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[2]: Target 'build' not remade because of errors.

Mon 2025/11/17 11:43:12 +0000, executing on 
    with default FLAVOUR.
make -C ../C getwcstab.o
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'

make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make -C ../C lib

-rw-r--r-- 1 root root  13452 Nov 17 11:34 cel.c
-rw-r--r-- 1 root root  94948 Nov 17 11:34 dis.c
drwxr-xr-x 2 root root   4096 Nov 17 11:34 flexed
-rw-r--r-- 1 root root   4019 Nov 17 11:34 getwcstab.c
-rw-r--r-- 1 root root  32501 Nov 17 11:34 lin.c
-rw-r--r-- 1 root root   2624 Nov 17 11:34 log.c
-rw-r--r-- 1 root root 191221 Nov 17 11:34 prj.c
-rw-r--r-- 1 root root  36570 Nov 17 11:34 spc.c
-rw-r--r-- 1 root root  11225 Nov 17 11:34 sph.c
-rw-r--r-- 1 root root  25485 Nov 17 11:34 spx.c
-rw-r--r-- 1 root root  44351 Nov 17 11:34 tab.c
-rw-r--r-- 1 root root 132921 Nov 17 11:34 wcs.c
-rw-r--r-- 1 root root   4567 Nov 17 11:34 wcserr.c
-rw-r--r-- 1 root root  40412 Nov 17 11:34 wcsfix.c
-rw-r--r-- 1 root root  72498 Nov 17 11:34 wcshdr.c
-rw-r--r-- 1 root root   4360 Nov 17 11:34 wcsprintf.c
-rw-r--r-- 1 root root   4145 Nov 17 11:34 wcstrig.c
-rw-r--r-- 1 root root   5412 Nov 17 11:34 wcsunits.c
-rw-r--r-- 1 root root  11534 Nov 17 11:34 wcsutil.c

total 9
drwxr-xr-x 2 root root 4096 Nov 17 11:34 .
drwxr-xr-x 4 root root 4096 Nov 17 11:43 ..
-rw-r--r-- 1 root root  292 Nov 17 11:34 README

Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease
Get:2 http://archive.ubuntu.com/ubuntu noble-updates InRelease [126 kB]
Get:3 http://security.ubuntu.com/ubuntu noble-security InRelease [126 kB]
Err:1 http://archive.ubuntu.com/ubuntu noble InRelease
  Couldn't create temporary file /tmp/apt.conf.tN67iA for passing config to apt-key
Err:3 http://security.ubuntu.com/ubuntu noble-security InRelease
  Couldn't create temporary file /tmp/apt.conf.NK7EJ6 for passing config to apt-key
Hit:4 https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu noble InRelease
Err:4 https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu noble InRelease
  Unable to mkstemp /tmp/apt-key.Teb1ks.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.92GocM for passing config to apt-key
Err:2 http://archive.ubuntu.com/ubuntu noble-updates InRelease
  Couldn't create temporary file /tmp/apt.conf.NWl5yL for passing config to apt-key
Get:5 http://archive.ubuntu.com/ubuntu noble-backports InRelease [126 kB]
Get:6 https://ppa.launchpadcontent.net/ondrej/php/ubuntu noble InRelease [24.3 kB]
Err:6 https://ppa.launchpadcontent.net/ondrej/php/ubuntu noble InRelease
  Unable to mkstemp /tmp/apt-key.2Yt9wz.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.ZWQEJl for passing config to apt-key
Err:5 http://archive.ubuntu.com/ubuntu noble-backports InRelease
  Couldn't create temporary file /tmp/apt.conf.rifq1V for passing config to apt-key
Fetched 403 kB in 1s (412 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  libfl-dev libfl2
Suggested packages:
  flex-doc
The following NEW packages will be installed:
  flex libfl-dev libfl2
0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
Need to get 317 kB of archives.
After this operation, 1068 kB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu noble/main amd64 flex amd64 2.6.4-8.2build1 [301 kB]
Get:2 http://archive.ubuntu.com/ubuntu noble/main amd64 libfl2 amd64 2.6.4-8.2build1 [9768 B]
Get:3 http://archive.ubuntu.com/ubuntu noble/main amd64 libfl-dev amd64 2.6.4-8.2build1 [6250 B]
Fetched 317 kB in 1s (628 kB/s)
Selecting previously unselected package flex.
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(Reading database ... 53678 files and directories currently installed.)
Preparing to unpack .../flex_2.6.4-8.2build1_amd64.deb ...
Unpacking flex (2.6.4-8.2build1) ...
Selecting previously unselected package libfl2:amd64.
Preparing to unpack .../libfl2_2.6.4-8.2build1_amd64.deb ...
Unpacking libfl2:amd64 (2.6.4-8.2build1) ...
Selecting previously unselected package libfl-dev:amd64.
Preparing to unpack .../libfl-dev_2.6.4-8.2build1_amd64.deb ...
Unpacking libfl-dev:amd64 (2.6.4-8.2build1) ...
Setting up flex (2.6.4-8.2build1) ...
Setting up libfl2:amd64 (2.6.4-8.2build1) ...
Setting up libfl-dev:amd64 (2.6.4-8.2build1) ...
Processing triggers for libc-bin (2.39-0ubuntu8.6) ...
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: http://archive.ubuntu.com/ubuntu noble InRelease: Couldn't create temporary file /tmp/apt.conf.tN67iA for passing config to apt-key
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: http://security.ubuntu.com/ubuntu noble-security InRelease: Couldn't create temporary file /tmp/apt.conf.NK7EJ6 for passing config to apt-key
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu noble InRelease: Unable to mkstemp /tmp/apt-key.Teb1ks.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.92GocM for passing config to apt-key
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: http://archive.ubuntu.com/ubuntu noble-updates InRelease: Couldn't create temporary file /tmp/apt.conf.NWl5yL for passing config to apt-key
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: https://ppa.launchpadcontent.net/ondrej/php/ubuntu noble InRelease: Unable to mkstemp /tmp/apt-key.2Yt9wz.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.ZWQEJl for passing config to apt-key
W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: http://archive.ubuntu.com/ubuntu noble-backports InRelease: Couldn't create temporary file /tmp/apt.conf.rifq1V for passing config to apt-key
W: Failed to fetch https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu/dists/noble/InRelease  Unable to mkstemp /tmp/apt-key.Teb1ks.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.92GocM for passing config to apt-key
W: Failed to fetch https://ppa.launchpadcontent.net/ondrej/php/ubuntu/dists/noble/InRelease  Unable to mkstemp /tmp/apt-key.2Yt9wz.asc - GetTempFile (13: Permission denied) Couldn't create temporary file /tmp/apt.conf.ZWQEJl for passing config to apt-key
W: Failed to fetch http://archive.ubuntu.com/ubuntu/dists/noble/InRelease  Couldn't create temporary file /tmp/apt.conf.tN67iA for passing config to apt-key
W: Failed to fetch http://archive.ubuntu.com/ubuntu/dists/noble-updates/InRelease  Couldn't create temporary file /tmp/apt.conf.NWl5yL for passing config to apt-key
W: Failed to fetch http://archive.ubuntu.com/ubuntu/dists/noble-backports/InRelease  Couldn't create temporary file /tmp/apt.conf.rifq1V for passing config to apt-key
W: Failed to fetch http://security.ubuntu.com/ubuntu/dists/noble-security/InRelease  Couldn't create temporary file /tmp/apt.conf.NK7EJ6 for passing config to apt-key
W: Some index files failed to download. They have been ignored, or old ones used instead.
debconf: delaying package configuration, since apt-utils is not installed

for DIR in C utils doxygen ; do \
     make -C $DIR distclean ; \
   done
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
rm -f *.o lib.lock *.i a.out t*.out core *.dSYM
rm -f -r 
rm -f .gdb_history
rm -f tlin tdis1 tdis2 tlog tprj1 tsph tsphdpa tspx ttab1 twcs twcssub tpih1 tbth1 tfitshdr tunits twcsfix twcscompare tdisiter tspcaips tspcspxe tspctrne twcs_locale tpthreads tsphdpa twcshdr
rm -f tspc tprj2 tcel1 tcel2 ttab2 ttab3 twcsmix tdis3 tpih2 twcshdr twcslint twcstab
rm -f bth.fits fitshdr.fits pih.fits wcslint.fits wcspcx.fits
rm -f wcstab.fits SIP.fits SIPTPV.fits TPV3.fits TPV5.fits
rm -f TPV7.fits DSS.fits TNX.fits ZPX.fits
rm -f t*_cfitsio test_results
rm -f ../wcsconfig.h ../wcsconfig_tests.h
rm -f fitshdr.c wcsbth.c wcspih.c wcsulex.c wcsutrn.c
rm -f libwcs-PIC.a libwcs-*.a libwcs.so.* libwcs.*.dylib
make[1]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
rm -f -r *.o *.i a.out core *.dSYM 
rm -f tofits fitshdr sundazel HPXcvt wcsware

make[2]: Target 'build' not remade because of errors.
make[1]: [GNUmakefile:51: build] Error 2 (ignored)
Building WCSLIB C library...
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:84: HPXcvt] Error 1
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:90: wcsware] Error 1
make[1]: Target 'install' not remade because of errors.
make: *** [GNUmakefile:83: install] Error 2
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', 'install']' returned non-zero exit status 2.

make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'

gcc -DHAVE_CONFIG_H -I.. -I../C -I/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/include -g -O2 -c -o HPXcvt.o HPXcvt.c
gcc -o HPXcvt HPXcvt.o -L/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -L/usr/local/lib /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -lm 
/usr/bin/ld: cannot find /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib: file format not recognized
collect2: error: ld returned 1 exit status
--
gcc -DDO_CFITSIO -DHAVE_CONFIG_H -I.. -I../C -I../pgsbox -I../C -I/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/include \
     -g -O2 -c -o wcsware.o wcsware.c
gcc -o wcsware wcsware.o ../C/getwcstab.o -L/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -L/usr/local/lib /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib ../C/libwcs-8.2.2.a \
      -lm 
/usr/bin/ld: cannot find /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib: file format not recognized
collect2: error: ld returned 1 exit status
--
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'

gcc -DHAVE_CONFIG_H -I.. -I../C -I/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/include -g -O2 -c -o HPXcvt.o HPXcvt.c
gcc -o HPXcvt HPXcvt.o -L/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -L/usr/local/lib /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -lm 
/usr/bin/ld: cannot find /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib: file format not recognized
collect2: error: ld returned 1 exit status
--
gcc -DDO_CFITSIO -DHAVE_CONFIG_H -I.. -I../C -I../pgsbox -I../C -I/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/include \
     -g -O2 -c -o wcsware.o wcsware.c
gcc -o wcsware wcsware.o ../C/getwcstab.o -L/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib -L/usr/local/lib /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib ../C/libwcs-8.2.2.a \
      -lm 
/usr/bin/ld: cannot find /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib: file format not recognized
collect2: error: ld returned 1 exit status

make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[2]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[2]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
Building WCSLIB C library...
make[1]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/C'
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make[1]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
make: *** [GNUmakefile:88: install] Error 1
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', 'install']' returned non-zero exit status 2.

if [ ! -d "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/man/man1" ] ; then \
     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/man/man1 ; \
   fi
/usr/bin/install -c -m 644 tofits.1 fitshdr.1 sundazel.1 /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/man/man1
make[1]: Leaving directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/utils'
if [ ! -d "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig" ] ; then \
     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig ; \
   fi
/usr/bin/install -c -m 444 wcslib.pc /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/wcslib.pc
/usr/bin/install -c -m 444 wcsconfig.h wcsconfig_f77.h /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2
if [ ! -d "/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2" ] ; then \
     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2 ; \
   fi
/usr/bin/install -c -m 444 CHANGES COPYING* README /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2
/usr/bin/install: cannot stat 'CHANGES': No such file or directory
make: *** [GNUmakefile:88: install] Error 1

make[1]: *** [GNUmakefile:80: install] Error 1
make: *** [GNUmakefile:92: install] Error 2
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['make', 'install']' returned non-zero exit status 2.

     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig ; \
   fi
/usr/bin/install -c -m 444 wcslib.pc /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/wcslib.pc
/usr/bin/install -c -m 444 wcsconfig.h wcsconfig_f77.h /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2
if [ ! -d "/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2" ] ; then \
     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2 ; \
   fi
/usr/bin/install -c -m 444 CHANGES COPYING* README /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2
/usr/bin/install -c -m 444 INSTALL THANKS VALIDATION /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2
if [ -h /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib ] ; then \
     rm -f /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib ; \
   fi
ln -s wcslib-8.2.2 /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib
make -k -C doxygen install
make[1]: Entering directory '/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/doxygen'
if [ ! -d "/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2" ] ; then \
     /usr/bin/install -c -d -m 775 /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2 ; \
   fi
/usr/bin/install -c -m 444 ../wcslib.pdf /home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/share/doc/wcslib-8.2.2
/usr/bin/install: cannot stat '../wcslib.pdf': No such file or directory
make[1]: *** [GNUmakefile:80: install] Error 1

>>> wcslib built successfully
>>> Building CPL...
configure: error: cannot find required auxiliary files: ltmain.sh
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 1.

Reading package lists...
Building dependency tree...
Reading state information...
libtool is already the newest version (2.4.7-7build1).
automake is already the newest version (1:1.16.5-1.3ubuntu1).
autoconf is already the newest version (2.71-3).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

checking for strstr... yes
checking for cosd in -lsunmath... no
checking for sincos... yes
checking size of int... 4
checking size of long int... 8
checking size of long long int... 8
checking for printf z format modifier for size_t type... yes
checking for printf$LDBLStub in -lSystemStubs... no
checking for ranlib... ranlib
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for unistd.h... (cached) yes
checking for _LARGEFILE_SOURCE value needed for large files... (cached) no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for /usr/local/cfitsio/lib... no
checking for /local/cfitsio/lib... no
checking for /usr/local/lib... yes
checking for /local/lib... no
checking for /opt/local/lib... no
checking for /opt/SUNWspro/lib... no
checking for /sw/lib... no
checking for /usr/local/cfitsio/include/cfitsio/fitsio.h... no
checking for /usr/local/cfitsio/include/fitsio.h... no
checking for /local/cfitsio/include/cfitsio/fitsio.h... no
checking for /local/cfitsio/include/fitsio.h... no
checking for /usr/local/include/cfitsio/fitsio.h... no
checking for /usr/local/include/fitsio.h... no
checking for /local/include/cfitsio/fitsio.h... no
checking for /local/include/fitsio.h... no
checking for /opt/local/include/cfitsio/fitsio.h... no
checking for /opt/local/include/fitsio.h... no
checking for /sw/include/cfitsio/fitsio.h... no
checking for /sw/include/fitsio.h... no
checking for /local/cfitsio/fitsio.h... no
checking for /local/fitsio.h... no
checking for /usr/include/cfitsio/fitsio.h... no
checking for /usr/include/fitsio.h... no
checking for recv in -lsocket... no
checking for ffopen in -lcfitsio... yes
Building WCSLIB C library...
Building WCSLIB C library...
>>> wcslib built successfully
>>> Building CPL...
>>> Regenerating autotools files for CPL...
Makefile.am:37: error: 'pkgconfig_DATA' is used but 'pkgconfigdir' is undefined
cext/Makefile.am:42: error: 'nodist_config_HEADERS' is used but 'configdir' is undefined
autoreconf: error: automake failed with exit status: 1
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['autoreconf', '-i']' returned non-zero exit status 1.

>>> cfitsio built successfully
>>> Building fftw...
>>> fftw built successfully
>>> Building wcslib...
configure: Using Flex version 2.6.4.
configure: WARNING: Compilation of Fortran wrappers and PGSBOX disabled.
configure: End of primary configuration.
configure: Looking for libraries etc. for utilities and test suite...
configure: WARNING: PGPLOT disabled.
configure: WARNING: CFITSIO not found, skipping CFITSIO-dependent tests.
configure: End of auxiliary configuration.
configure: Configuring files...
configure: creating ./config.status
Building WCSLIB C library...
Building WCSLIB C library...
>>> wcslib built successfully
>>> Building CPL...
configure: error: cannot find required auxiliary files: ltmain.sh
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 1.

# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Virtual environments
venv/
ENV/
env/
.venv

# Testing
.pytest_cache/
.tox/
.coverage
.coverage.*
htmlcov/
.hypothesis/

# IDEs
.vscode/
.idea/
*.swp
*.swo
*~
.DS_Store

# C/C++ build artifacts
*.o
*.a
*.so
*.dylib
*.dll
*.exe
*.out
*.app
*.i
*.s
*.lo
*.la
*.lai
*.mod
*.smod

# Autotools (keep configure scripts from source distributions)
autom4te.cache/
config.log
config.status
.deps/
.libs/
libtool
stamp-h1
ltmain.sh
*.m4
!m4/

# Build directories
build/
dist/
_build/
*.build/
install/

# Documentation builds (generated HTML docs)
docs/_build/
**/html/
**/doc/
**/docs/
*.pdf
*.ps
*.dvi
*.tex
*.info
*.info-*
texinfo.tex

# Archives and compressed files
*.tar.gz
*.tgz
*.zip
*.bz2
*.xz

# FITS test files (can be large)
*.fits
*.fit

# Generated C files from flex/bison
**/flexed/*.c
**/flexed/*.h

# Backup files
*.bak
*.orig
*.rej

# Changelog files (can be very large)
ChangeLog
CHANGES

/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/aclocal.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltsugar.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltversion.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltoptions.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/lt~obsolete.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/libtool.m4
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/libcext/aclocal.m4

total 153
drwxr-xr-x  2 root root  4096 Nov 17 11:34 .
drwxr-xr-x 12 root root  4096 Nov 17 12:10 ..
-rwxr-xr-x  1 root root  7400 Nov 17 11:34 compile
-rwxr-xr-x  1 root root 49804 Nov 17 11:34 config.guess
-rwxr-xr-x  1 root root 35276 Nov 17 11:34 config.sub
-rwxr-xr-x  1 root root 23568 Nov 17 11:34 depcomp
-rw-r--r--  1 root root  3030 Nov 17 11:34 doxygen.am
-rwxr-xr-x  1 root root 15358 Nov 17 11:34 install-sh
-rwxr-xr-x  1 root root  6878 Nov 17 11:34 missing
-rwxr-xr-x  1 root root  4924 Nov 17 11:34 test-driver

On branch claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw
Changes not staged for commit:
  (use "git add/rm <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
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	deleted:    cfitsio-4.6.2/licenses/License.txt
	deleted:    cfitsio-4.6.2/longnam.h
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	deleted:    cfitsio-4.6.2/pliocomp.c
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... [3412 lines truncated] ...

On branch claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw
Changes to be committed:
  (use "git restore --staged <file>..." to unstage)
	modified:   pycpl-1.0.3/MANIFEST.in
	new file:   pycpl-1.0.3/build.log
	new file:   pycpl-1.0.3/build2.log
	new file:   pycpl-1.0.3/build3.log
	new file:   pycpl-1.0.3/build4.log
	new file:   pycpl-1.0.3/build5.log
	new file:   pycpl-1.0.3/build6.log
	new file:   pycpl-1.0.3/build_final.log
	new file:   pycpl-1.0.3/build_final2.log
	modified:   pycpl-1.0.3/setup.py
	renamed:    cfitsio-4.6.2/CMakeLists.txt -> pycpl-1.0.3/vendor/cfitsio-4.6.2/CMakeLists.txt
	renamed:    cfitsio-4.6.2/INSTALL -> pycpl-1.0.3/vendor/cfitsio-4.6.2/INSTALL
	renamed:    cfitsio-4.6.2/Makefile.am -> pycpl-1.0.3/vendor/cfitsio-4.6.2/Makefile.am
	renamed:    cfitsio-4.6.2/Makefile.in -> pycpl-1.0.3/vendor/cfitsio-4.6.2/Makefile.in
	renamed:    cfitsio-4.6.2/README.MacOS -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.MacOS
	renamed:    cfitsio-4.6.2/README.md -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.md
	renamed:    cfitsio-4.6.2/README.win -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.win
	renamed:    cfitsio-4.6.2/README_OLD.win -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README_OLD.win
	renamed:    cfitsio-4.6.2/buffers.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/buffers.c
	renamed:    cfitsio-4.6.2/cfileio.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfileio.c
	renamed:    cfitsio-4.6.2/cfitsio.pc.cmake -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.pc.cmake
	renamed:    cfitsio-4.6.2/cfitsio.pc.in -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.pc.in
	renamed:    cfitsio-4.6.2/cfitsio.xcodeproj/project.pbxproj -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.xcodeproj/project.pbxproj
	renamed:    cfitsio-4.6.2/cfortran.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfortran.h
	renamed:    cfitsio-4.6.2/checksum.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/checksum.c
	renamed:    cfitsio-4.6.2/cmake/cfitsioConfig.cmake -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cmake/cfitsioConfig.cmake
	renamed:    cfitsio-4.6.2/config/compile -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/compile
	renamed:    cfitsio-4.6.2/config/config.guess -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/config.guess
	renamed:    cfitsio-4.6.2/config/config.sub -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/config.sub
	renamed:    cfitsio-4.6.2/config/depcomp -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/depcomp
	renamed:    cfitsio-4.6.2/config/install-sh -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/install-sh
	renamed:    cfitsio-4.6.2/config/missing -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/missing
	renamed:    cfitsio-4.6.2/configure -> pycpl-1.0.3/vendor/cfitsio-4.6.2/configure
	renamed:    cfitsio-4.6.2/configure.ac -> pycpl-1.0.3/vendor/cfitsio-4.6.2/configure.ac
	renamed:    cfitsio-4.6.2/drvrfile.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrfile.c
	renamed:    cfitsio-4.6.2/drvrgsiftp.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrgsiftp.c
	renamed:    cfitsio-4.6.2/drvrgsiftp.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrgsiftp.h
	renamed:    cfitsio-4.6.2/drvrmem.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrmem.c
	renamed:    cfitsio-4.6.2/drvrnet.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrnet.c
	renamed:    cfitsio-4.6.2/drvrsmem.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrsmem.c
	renamed:    cfitsio-4.6.2/drvrsmem.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/drvrsmem.h
	renamed:    cfitsio-4.6.2/editcol.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/editcol.c
	renamed:    cfitsio-4.6.2/edithdu.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/edithdu.c
	renamed:    cfitsio-4.6.2/eval.l -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval.l
	renamed:    cfitsio-4.6.2/eval.y -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval.y
	renamed:    cfitsio-4.6.2/eval_defs.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval_defs.h
	renamed:    cfitsio-4.6.2/eval_f.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval_f.c
	renamed:    cfitsio-4.6.2/eval_l.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval_l.c
	renamed:    cfitsio-4.6.2/eval_tab.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval_tab.h
	renamed:    cfitsio-4.6.2/eval_y.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/eval_y.c
	renamed:    cfitsio-4.6.2/f77.inc -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77.inc
	renamed:    cfitsio-4.6.2/f77_wrap.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77_wrap.h
	renamed:    cfitsio-4.6.2/f77_wrap1.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77_wrap1.c
	renamed:    cfitsio-4.6.2/f77_wrap2.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77_wrap2.c
	renamed:    cfitsio-4.6.2/f77_wrap3.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77_wrap3.c
	renamed:    cfitsio-4.6.2/f77_wrap4.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/f77_wrap4.c
	renamed:    cfitsio-4.6.2/fits_hcompress.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/fits_hcompress.c
	renamed:    cfitsio-4.6.2/fits_hdecompress.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/fits_hdecompress.c
	renamed:    cfitsio-4.6.2/fitscore.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/fitscore.c
	renamed:    cfitsio-4.6.2/fitsio.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/fitsio.h
	renamed:    cfitsio-4.6.2/fitsio2.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/fitsio2.h
	renamed:    cfitsio-4.6.2/getcol.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcol.c
	renamed:    cfitsio-4.6.2/getcolb.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcolb.c
	renamed:    cfitsio-4.6.2/getcold.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcold.c
	renamed:    cfitsio-4.6.2/getcole.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcole.c
	renamed:    cfitsio-4.6.2/getcoli.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcoli.c
	renamed:    cfitsio-4.6.2/getcolj.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcolj.c
	renamed:    cfitsio-4.6.2/getcolk.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcolk.c
	renamed:    cfitsio-4.6.2/getcoll.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcoll.c
	renamed:    cfitsio-4.6.2/getcols.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcols.c
	renamed:    cfitsio-4.6.2/getcolsb.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcolsb.c
	renamed:    cfitsio-4.6.2/getcolui.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcolui.c
	renamed:    cfitsio-4.6.2/getcoluj.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcoluj.c
	renamed:    cfitsio-4.6.2/getcoluk.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getcoluk.c
	renamed:    cfitsio-4.6.2/getkey.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/getkey.c
	renamed:    cfitsio-4.6.2/group.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/group.c
	renamed:    cfitsio-4.6.2/group.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/group.h
	renamed:    cfitsio-4.6.2/grparser.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/grparser.c
	renamed:    cfitsio-4.6.2/grparser.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/grparser.h
	renamed:    cfitsio-4.6.2/histo.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/histo.c
	renamed:    cfitsio-4.6.2/imcompress.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/imcompress.c
	renamed:    cfitsio-4.6.2/iraffits.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iraffits.c
	renamed:    cfitsio-4.6.2/iter_a.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_a.c
	renamed:    cfitsio-4.6.2/iter_a.f -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_a.f
	renamed:    cfitsio-4.6.2/iter_b.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_b.c
	renamed:    cfitsio-4.6.2/iter_b.f -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_b.f
	renamed:    cfitsio-4.6.2/iter_c.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_c.c
	renamed:    cfitsio-4.6.2/iter_c.f -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_c.f
	renamed:    cfitsio-4.6.2/iter_image.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_image.c
	renamed:    cfitsio-4.6.2/iter_var.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/iter_var.c
	renamed:    cfitsio-4.6.2/licenses/License.txt -> pycpl-1.0.3/vendor/cfitsio-4.6.2/licenses/License.txt
	renamed:    cfitsio-4.6.2/longnam.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/longnam.h
	renamed:    cfitsio-4.6.2/modkey.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/modkey.c
	renamed:    cfitsio-4.6.2/pliocomp.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/pliocomp.c
	renamed:    cfitsio-4.6.2/putcol.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcol.c
	renamed:    cfitsio-4.6.2/putcolb.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolb.c
	renamed:    cfitsio-4.6.2/putcold.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcold.c
	renamed:    cfitsio-4.6.2/putcole.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcole.c
	renamed:    cfitsio-4.6.2/putcoli.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcoli.c
	renamed:    cfitsio-4.6.2/putcolj.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolj.c
	renamed:    cfitsio-4.6.2/putcolk.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolk.c
	renamed:    cfitsio-4.6.2/putcoll.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcoll.c
	renamed:    cfitsio-4.6.2/putcols.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcols.c
	renamed:    cfitsio-4.6.2/putcolsb.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolsb.c
	renamed:    cfitsio-4.6.2/putcolu.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolu.c
	renamed:    cfitsio-4.6.2/putcolui.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcolui.c
	renamed:    cfitsio-4.6.2/putcoluj.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcoluj.c
	renamed:    cfitsio-4.6.2/putcoluk.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putcoluk.c
	renamed:    cfitsio-4.6.2/putkey.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/putkey.c
	renamed:    cfitsio-4.6.2/quantize.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/quantize.c
	renamed:    cfitsio-4.6.2/region.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/region.c
	renamed:    cfitsio-4.6.2/region.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/region.h
	renamed:    cfitsio-4.6.2/ricecomp.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/ricecomp.c
	renamed:    cfitsio-4.6.2/sample.tpl -> pycpl-1.0.3/vendor/cfitsio-4.6.2/sample.tpl
	renamed:    cfitsio-4.6.2/scalnull.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/scalnull.c
	renamed:    cfitsio-4.6.2/simplerng.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/simplerng.c
	renamed:    cfitsio-4.6.2/simplerng.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/simplerng.h
	renamed:    cfitsio-4.6.2/swapproc.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/swapproc.c
	renamed:    cfitsio-4.6.2/testf77.std -> pycpl-1.0.3/vendor/cfitsio-4.6.2/testf77.std
	renamed:    cfitsio-4.6.2/testprog.std -> pycpl-1.0.3/vendor/cfitsio-4.6.2/testprog.std
	renamed:    cfitsio-4.6.2/testprog.tpt -> pycpl-1.0.3/vendor/cfitsio-4.6.2/testprog.tpt
	renamed:    cfitsio-4.6.2/utilities/cookbook.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/cookbook.c
	renamed:    cfitsio-4.6.2/utilities/cookbook.f -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/cookbook.f
	renamed:    cfitsio-4.6.2/utilities/fitscopy.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fitscopy.c
	renamed:    cfitsio-4.6.2/utilities/fitsverify.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fitsverify.c
	renamed:    cfitsio-4.6.2/utilities/fpack.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fpack.c
	renamed:    cfitsio-4.6.2/utilities/fpack.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fpack.h
	renamed:    cfitsio-4.6.2/utilities/fpackutil.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fpackutil.c
	renamed:    cfitsio-4.6.2/utilities/ftverify.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/ftverify.c
	renamed:    cfitsio-4.6.2/utilities/funpack.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/funpack.c
	renamed:    cfitsio-4.6.2/utilities/fverify.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fverify.h
	renamed:    cfitsio-4.6.2/utilities/fvrf_data.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fvrf_data.c
	renamed:    cfitsio-4.6.2/utilities/fvrf_file.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fvrf_file.c
	renamed:    cfitsio-4.6.2/utilities/fvrf_head.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fvrf_head.c
	renamed:    cfitsio-4.6.2/utilities/fvrf_key.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fvrf_key.c
	renamed:    cfitsio-4.6.2/utilities/fvrf_misc.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/fvrf_misc.c
	renamed:    cfitsio-4.6.2/utilities/imcopy.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/imcopy.c
	renamed:    cfitsio-4.6.2/utilities/smem.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/smem.c
	renamed:    cfitsio-4.6.2/utilities/speed.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/speed.c
	renamed:    cfitsio-4.6.2/utilities/testf77.f -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/testf77.f
	renamed:    cfitsio-4.6.2/utilities/testprog.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/utilities/testprog.c
	renamed:    cfitsio-4.6.2/vmsieee.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/vmsieee.c
	renamed:    cfitsio-4.6.2/wcssub.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/wcssub.c
	renamed:    cfitsio-4.6.2/wcsutil.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/wcsutil.c
	renamed:    cfitsio-4.6.2/winDumpExts.mak -> pycpl-1.0.3/vendor/cfitsio-4.6.2/winDumpExts.mak
	renamed:    cfitsio-4.6.2/windumpexts.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/windumpexts.c
	renamed:    cfitsio-4.6.2/zcompress.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/zcompress.c
	renamed:    cfitsio-4.6.2/zuncompress.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/zuncompress.c
	renamed:    cpl-7.3.2/AUTHORS -> pycpl-1.0.3/vendor/cpl-7.3.2/AUTHORS
	renamed:    cpl-7.3.2/BUGS -> pycpl-1.0.3/vendor/cpl-7.3.2/BUGS
	renamed:    cpl-7.3.2/COPYING -> pycpl-1.0.3/vendor/cpl-7.3.2/COPYING
	renamed:    cpl-7.3.2/ChangeLog-0 -> pycpl-1.0.3/vendor/cpl-7.3.2/ChangeLog-0
	renamed:    cpl-7.3.2/ChangeLog-1 -> pycpl-1.0.3/vendor/cpl-7.3.2/ChangeLog-1
	renamed:    cpl-7.3.2/Doxyfile.in -> pycpl-1.0.3/vendor/cpl-7.3.2/Doxyfile.in
	renamed:    cpl-7.3.2/INSTALL -> pycpl-1.0.3/vendor/cpl-7.3.2/INSTALL
	renamed:    cpl-7.3.2/Makefile.am -> pycpl-1.0.3/vendor/cpl-7.3.2/Makefile.am
	renamed:    cpl-7.3.2/Makefile.in -> pycpl-1.0.3/vendor/cpl-7.3.2/Makefile.in
	renamed:    cpl-7.3.2/NEWS -> pycpl-1.0.3/vendor/cpl-7.3.2/NEWS
	renamed:    cpl-7.3.2/README -> pycpl-1.0.3/vendor/cpl-7.3.2/README
	renamed:    cpl-7.3.2/TODO -> pycpl-1.0.3/vendor/cpl-7.3.2/TODO
	renamed:    cpl-7.3.2/admin/compile -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/compile
	renamed:    cpl-7.3.2/admin/config.guess -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/config.guess
	renamed:    cpl-7.3.2/admin/config.sub -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/config.sub
	renamed:    cpl-7.3.2/admin/depcomp -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/depcomp
	renamed:    cpl-7.3.2/admin/doxygen.am -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/doxygen.am
	renamed:    cpl-7.3.2/admin/install-sh -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/install-sh
	renamed:    cpl-7.3.2/admin/missing -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/missing
	renamed:    cpl-7.3.2/admin/test-driver -> pycpl-1.0.3/vendor/cpl-7.3.2/admin/test-driver
	renamed:    cpl-7.3.2/config.h.in -> pycpl-1.0.3/vendor/cpl-7.3.2/config.h.in
	renamed:    cpl-7.3.2/configure -> pycpl-1.0.3/vendor/cpl-7.3.2/configure
	renamed:    cpl-7.3.2/configure.ac -> pycpl-1.0.3/vendor/cpl-7.3.2/configure.ac
	renamed:    cpl-7.3.2/cpl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cpl.h
	renamed:    cpl-7.3.2/cplcore/Makefile.am -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/Makefile.am
	renamed:    cpl-7.3.2/cplcore/Makefile.in -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/Makefile.in
	renamed:    cpl-7.3.2/cplcore/cpl_array.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_array.c
	renamed:    cpl-7.3.2/cplcore/cpl_array.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_array.h
	renamed:    cpl-7.3.2/cplcore/cpl_array_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_array_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_bivector.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_bivector.c
	renamed:    cpl-7.3.2/cplcore/cpl_bivector.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_bivector.h
	renamed:    cpl-7.3.2/cplcore/cpl_cfitsio.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_cfitsio.c
	renamed:    cpl-7.3.2/cplcore/cpl_cfitsio.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_cfitsio.h
	renamed:    cpl-7.3.2/cplcore/cpl_column.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_column.c
	renamed:    cpl-7.3.2/cplcore/cpl_column.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_column.h
	renamed:    cpl-7.3.2/cplcore/cpl_column_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_column_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_error.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_error.c
	renamed:    cpl-7.3.2/cplcore/cpl_error.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_error.h
	renamed:    cpl-7.3.2/cplcore/cpl_error_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_error_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_errorstate.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_errorstate.c
	renamed:    cpl-7.3.2/cplcore/cpl_errorstate.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_errorstate.h
	renamed:    cpl-7.3.2/cplcore/cpl_filter.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_filter.h
	renamed:    cpl-7.3.2/cplcore/cpl_filter_median.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_filter_median.c
	renamed:    cpl-7.3.2/cplcore/cpl_fits.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_fits.c
	renamed:    cpl-7.3.2/cplcore/cpl_fits.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_fits.h
	renamed:    cpl-7.3.2/cplcore/cpl_fits_card.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_fits_card.c
	renamed:    cpl-7.3.2/cplcore/cpl_fits_card.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_fits_card.h
	renamed:    cpl-7.3.2/cplcore/cpl_func.h.bot -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_func.h.bot
	renamed:    cpl-7.3.2/cplcore/cpl_func.h.top -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_func.h.top
	renamed:    cpl-7.3.2/cplcore/cpl_image.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_basic.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_basic.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_basic.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_basic.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_basic_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_basic_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_basic_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_basic_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_bpm.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_bpm.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_bpm.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_bpm.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_bpm_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_bpm_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_bpm_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_bpm_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_defs.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_defs.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_fft.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_fft.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_fft_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_fft_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_filter.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_filter.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_filter.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_filter.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_filter_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_filter_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_filter_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_filter_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_gen.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_gen.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_gen.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_gen.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_gen_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_gen_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_io.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_io.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_io.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_io.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_io_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_io_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_io_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_io_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_iqe.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_iqe.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_iqe.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_iqe.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_resample.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_resample.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_resample.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_resample.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_resample_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_resample_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_stats.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_stats.c
	renamed:    cpl-7.3.2/cplcore/cpl_image_stats.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_stats.h
	renamed:    cpl-7.3.2/cplcore/cpl_image_stats_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_image_stats_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist.h
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_basic.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_basic.c
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_basic.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_basic.h
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_basic_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_basic_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_defs.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_defs.h
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_io.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_io.c
	renamed:    cpl-7.3.2/cplcore/cpl_imagelist_io.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_imagelist_io.h
	renamed:    cpl-7.3.2/cplcore/cpl_init.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_init.c
	renamed:    cpl-7.3.2/cplcore/cpl_init.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_init.h
	renamed:    cpl-7.3.2/cplcore/cpl_io.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_io.h
	renamed:    cpl-7.3.2/cplcore/cpl_io_fits.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_io_fits.c
	renamed:    cpl-7.3.2/cplcore/cpl_io_fits.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_io_fits.h
	renamed:    cpl-7.3.2/cplcore/cpl_macros.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_macros.h
	renamed:    cpl-7.3.2/cplcore/cpl_mask.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask.c
	renamed:    cpl-7.3.2/cplcore/cpl_mask.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask.h
	renamed:    cpl-7.3.2/cplcore/cpl_mask_binary.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask_binary.h
	renamed:    cpl-7.3.2/cplcore/cpl_mask_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_mask_defs.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask_defs.h
	renamed:    cpl-7.3.2/cplcore/cpl_mask_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mask_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_math_const.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_math_const.h
	renamed:    cpl-7.3.2/cplcore/cpl_matrix.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_matrix.c
	renamed:    cpl-7.3.2/cplcore/cpl_matrix.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_matrix.h
	renamed:    cpl-7.3.2/cplcore/cpl_matrix_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_matrix_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_memory.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_memory.c
	renamed:    cpl-7.3.2/cplcore/cpl_memory.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_memory.h
	renamed:    cpl-7.3.2/cplcore/cpl_memory_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_memory_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_mpfit.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mpfit.c
	renamed:    cpl-7.3.2/cplcore/cpl_mpfit.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_mpfit.h
	renamed:    cpl-7.3.2/cplcore/cpl_msg.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_msg.c
	renamed:    cpl-7.3.2/cplcore/cpl_msg.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_msg.h
	renamed:    cpl-7.3.2/cplcore/cpl_plot.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_plot.c
	renamed:    cpl-7.3.2/cplcore/cpl_plot.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_plot.h
	renamed:    cpl-7.3.2/cplcore/cpl_polynomial.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_polynomial.c
	renamed:    cpl-7.3.2/cplcore/cpl_polynomial.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_polynomial.h
	renamed:    cpl-7.3.2/cplcore/cpl_polynomial_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_polynomial_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_property.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_property.c
	renamed:    cpl-7.3.2/cplcore/cpl_property.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_property.h
	renamed:    cpl-7.3.2/cplcore/cpl_property_dicb.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_property_dicb.c
	renamed:    cpl-7.3.2/cplcore/cpl_property_dicb.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_property_dicb.h
	renamed:    cpl-7.3.2/cplcore/cpl_property_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_property_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_propertylist.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_propertylist.c
	renamed:    cpl-7.3.2/cplcore/cpl_propertylist.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_propertylist.h
	renamed:    cpl-7.3.2/cplcore/cpl_propertylist_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_propertylist_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_stats.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_stats.c
	renamed:    cpl-7.3.2/cplcore/cpl_stats.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_stats.h
	renamed:    cpl-7.3.2/cplcore/cpl_stats_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_stats_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_stats_defs.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_stats_defs.h
	renamed:    cpl-7.3.2/cplcore/cpl_stats_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_stats_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_table.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_table.c
	renamed:    cpl-7.3.2/cplcore/cpl_table.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_table.h
	renamed:    cpl-7.3.2/cplcore/cpl_test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_test.c
	renamed:    cpl-7.3.2/cplcore/cpl_test.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_test.h
	renamed:    cpl-7.3.2/cplcore/cpl_tools.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_tools.c
	renamed:    cpl-7.3.2/cplcore/cpl_tools.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_tools.h
	renamed:    cpl-7.3.2/cplcore/cpl_tools_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_tools_body.h
	renamed:    cpl-7.3.2/cplcore/cpl_type.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_type.c
	renamed:    cpl-7.3.2/cplcore/cpl_type.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_type.h
	renamed:    cpl-7.3.2/cplcore/cpl_type_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_type_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_vector.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_vector.c
	renamed:    cpl-7.3.2/cplcore/cpl_vector.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_vector.h
	renamed:    cpl-7.3.2/cplcore/cpl_vector_fit_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_vector_fit_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_vector_impl.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_vector_impl.h
	renamed:    cpl-7.3.2/cplcore/cpl_version.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_version.c
	renamed:    cpl-7.3.2/cplcore/cpl_version.h.bot -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_version.h.bot
	renamed:    cpl-7.3.2/cplcore/cpl_version.h.top -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_version.h.top
	renamed:    cpl-7.3.2/cplcore/cpl_xmemory.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_xmemory.c
	renamed:    cpl-7.3.2/cplcore/cpl_xmemory.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/cpl_xmemory.h
	renamed:    cpl-7.3.2/cplcore/tests/Makefile.am -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/Makefile.am
	renamed:    cpl-7.3.2/cplcore/tests/Makefile.in -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/Makefile.in
	renamed:    cpl-7.3.2/cplcore/tests/cpl_array-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_array-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_bivector-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_bivector-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_error-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_error-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_errorstate-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_errorstate-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_filter-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_filter-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_filter_body.h -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_filter_body.h
	renamed:    cpl-7.3.2/cplcore/tests/cpl_fits-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_fits-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_basic-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_basic-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_bpm-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_bpm-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_filter-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_filter-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_gen-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_gen-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_io-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_io-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_iqe-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_iqe-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_image_resample-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_image_resample-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_imagelist_basic-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_imagelist_basic-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_imagelist_io-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_imagelist_io-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_io_fits-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_io_fits-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_mask-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_mask-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_math-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_math-test.c
	renamed:    cpl-7.3.2/cplcore/tests/cpl_matrix-test.c -> pycpl-1.0.3/vendor/cpl-7.3.2/cplcore/tests/cpl_matrix-test.c
	renamed:   

... [3753 lines truncated] ...

M  .gitignore
M  pycpl-1.0.3/MANIFEST.in
M  pycpl-1.0.3/setup.py
R  cfitsio-4.6.2/CMakeLists.txt -> pycpl-1.0.3/vendor/cfitsio-4.6.2/CMakeLists.txt
R  cfitsio-4.6.2/INSTALL -> pycpl-1.0.3/vendor/cfitsio-4.6.2/INSTALL
R  cfitsio-4.6.2/Makefile.am -> pycpl-1.0.3/vendor/cfitsio-4.6.2/Makefile.am
R  cfitsio-4.6.2/Makefile.in -> pycpl-1.0.3/vendor/cfitsio-4.6.2/Makefile.in
R  cfitsio-4.6.2/README.MacOS -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.MacOS
R  cfitsio-4.6.2/README.md -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.md
R  cfitsio-4.6.2/README.win -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README.win
R  cfitsio-4.6.2/README_OLD.win -> pycpl-1.0.3/vendor/cfitsio-4.6.2/README_OLD.win
R  cfitsio-4.6.2/buffers.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/buffers.c
R  cfitsio-4.6.2/cfileio.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfileio.c
R  cfitsio-4.6.2/cfitsio.pc.cmake -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.pc.cmake
R  cfitsio-4.6.2/cfitsio.pc.in -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.pc.in
R  cfitsio-4.6.2/cfitsio.xcodeproj/project.pbxproj -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfitsio.xcodeproj/project.pbxproj
R  cfitsio-4.6.2/cfortran.h -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cfortran.h
R  cfitsio-4.6.2/checksum.c -> pycpl-1.0.3/vendor/cfitsio-4.6.2/checksum.c
R  cfitsio-4.6.2/cmake/cfitsioConfig.cmake -> pycpl-1.0.3/vendor/cfitsio-4.6.2/cmake/cfitsioConfig.cmake
R  cfitsio-4.6.2/config/compile -> pycpl-1.0.3/vendor/cfitsio-4.6.2/config/compile

[claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw 1e969e0] Bundle CPL library and dependencies with pycpl
 4063 files changed, 850 insertions(+), 4242 deletions(-)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/CMakeLists.txt (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/INSTALL (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/Makefile.am (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/Makefile.in (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.MacOS (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.md (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.win (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README_OLD.win (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/buffers.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfileio.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.pc.cmake (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.pc.in (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.xcodeproj/project.pbxproj (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfortran.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/checksum.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cmake/cfitsioConfig.cmake (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/compile (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/config.guess (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/config.sub (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/depcomp (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/install-sh (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/missing (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/configure (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/configure.ac (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrfile.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrgsiftp.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrgsiftp.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrmem.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrnet.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrsmem.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrsmem.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/editcol.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/edithdu.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval.l (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval.y (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_defs.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_f.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_l.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_tab.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_y.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77.inc (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77_wrap.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77_wrap1.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77_wrap2.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77_wrap3.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77_wrap4.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/fits_hcompress.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/fits_hdecompress.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/fitscore.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/fitsio.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/fitsio2.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcol.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcolb.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcold.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcole.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcoli.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcolj.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcolk.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcoll.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcols.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcolsb.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcolui.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcoluj.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getcoluk.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/getkey.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/group.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/group.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/grparser.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/grparser.h (100%)
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... [3695 lines truncated] ...

Exit code 1
Rebasing (1/1)
error: The following untracked working tree files would be overwritten by merge:
	pycpl-1.0.3/vendor/cpl-7.3.2/aclocal.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/aclocal.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/admin/ltmain.sh
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/libtool.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltoptions.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltsugar.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltversion.m4
	pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/lt~obsolete.m4
	pycpl-1.0.3/vendor/wcslib-8.2.2/CHANGES
Please move or remove them before you merge.
Aborting
hint: Could not execute the todo command
hint: 
hint:     pick 1e969e04ae5646267f5286ae1d833cac01f102f0 Bundle CPL library and dependencies with pycpl
hint: 
hint: It has been rescheduled; To edit the command before continuing, please
hint: edit the todo list first:
hint: 
hint:     git rebase --edit-todo
hint:     git rebase --continue

Exit code 1
Rebasing (2/2)
error: could not apply 1e969e0... Bundle CPL library and dependencies with pycpl
hint: Resolve all conflicts manually, mark them as resolved with
hint: "git add/rm <conflicted_files>", then run "git rebase --continue".
hint: You can instead skip this commit: run "git rebase --skip".
hint: To abort and get back to the state before "git rebase", run "git rebase --abort".
Could not apply 1e969e0... Bundle CPL library and dependencies with pycpl

Auto-merging .gitignore
CONFLICT (content): Merge conflict in .gitignore
CONFLICT (file location): cfitsio-4.6.2/aclocal.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/aclocal.m4.
CONFLICT (file location): cfitsio-4.6.2/config/ltmain.sh added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/config/ltmain.sh.
CONFLICT (file location): cfitsio-4.6.2/m4/libtool.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/libtool.m4.
CONFLICT (file location): cfitsio-4.6.2/m4/ltoptions.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltoptions.m4.
CONFLICT (file location): cfitsio-4.6.2/m4/ltsugar.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltsugar.m4.
CONFLICT (file location): cfitsio-4.6.2/m4/ltversion.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltversion.m4.
CONFLICT (file location): cfitsio-4.6.2/m4/lt~obsolete.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/lt~obsolete.m4.
CONFLICT (file location): cpl-7.3.2/acinclude.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/acinclude.m4.
CONFLICT (file location): cpl-7.3.2/aclocal.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/aclocal.m4.
CONFLICT (file location): cpl-7.3.2/admin/ltmain.sh added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/admin/ltmain.sh.
CONFLICT (file location): cpl-7.3.2/libcext/acinclude.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/acinclude.m4.
CONFLICT (file location): cpl-7.3.2/libcext/aclocal.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/aclocal.m4.
CONFLICT (file location): cpl-7.3.2/libcext/admin/ltmain.sh added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/admin/ltmain.sh.
CONFLICT (file location): cpl-7.3.2/libcext/m4/eso.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/eso.m4.
CONFLICT (file location): cpl-7.3.2/libcext/m4/libtool.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/libtool.m4.
CONFLICT (file location): cpl-7.3.2/libcext/m4/ltoptions.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltoptions.m4.
CONFLICT (file location): cpl-7.3.2/libcext/m4/ltsugar.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltsugar.m4.
CONFLICT (file location): cpl-7.3.2/libcext/m4/ltversion.m4 added in HEAD inside a directory that w

... [3548 characters truncated] ...

ng it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/ltmain.sh.
CONFLICT (file location): fftw-3.3.10/m4/acx_mpi.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/acx_mpi.m4.
CONFLICT (file location): fftw-3.3.10/m4/acx_pthread.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/acx_pthread.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_cc_maxopt.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_cc_maxopt.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_check_compiler_flags.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_check_compiler_flags.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_compiler_vendor.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_compiler_vendor.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_gcc_aligns_stack.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_gcc_aligns_stack.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_gcc_version.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_gcc_version.m4.
CONFLICT (file location): fftw-3.3.10/m4/ax_openmp.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_openmp.m4.
CONFLICT (file location): fftw-3.3.10/m4/libtool.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/libtool.m4.
CONFLICT (file location): fftw-3.3.10/m4/ltoptions.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltoptions.m4.
CONFLICT (file location): fftw-3.3.10/m4/ltsugar.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltsugar.m4.
CONFLICT (file location): fftw-3.3.10/m4/ltversion.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltversion.m4.
CONFLICT (file location): fftw-3.3.10/m4/lt~obsolete.m4 added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/fftw-3.3.10/m4/lt~obsolete.m4.
CONFLICT (file location): wcslib-8.2.2/C/flexed/fitshdr.c added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/fitshdr.c.
CONFLICT (file location): wcslib-8.2.2/C/flexed/wcsbth.c added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsbth.c.
CONFLICT (file location): wcslib-8.2.2/C/flexed/wcspih.c added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcspih.c.
CONFLICT (file location): wcslib-8.2.2/C/flexed/wcsulex.c added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsulex.c.
CONFLICT (file location): wcslib-8.2.2/C/flexed/wcsutrn.c added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsutrn.c.
CONFLICT (file location): wcslib-8.2.2/CHANGES added in HEAD inside a directory that was renamed in 1e969e0 (Bundle CPL library and dependencies with pycpl), suggesting it should perhaps be moved to pycpl-1.0.3/vendor/wcslib-8.2.2/CHANGES.

     1→# Python
     2→__pycache__/
     3→*.py[cod]
     4→*$py.class
     5→*.so
     6→.Python
     7→build/
     8→develop-eggs/
     9→dist/
    10→downloads/
    11→eggs/
    12→.eggs/
    13→lib/
    14→lib64/
    15→parts/
    16→sdist/
    17→var/
    18→wheels/
    19→*.egg-info/
    20→.installed.cfg
    21→*.egg
    22→MANIFEST
    23→
    24→# Virtual environments
    25→venv/
    26→ENV/
    27→env/
    28→.venv
    29→
    30→# Testing
    31→.pytest_cache/
    32→.tox/
    33→.coverage
    34→.coverage.*
    35→htmlcov/
    36→.hypothesis/
    37→
    38→# IDEs
    39→.vscode/
    40→.idea/
    41→*.swp
    42→*.swo
    43→*~
    44→.DS_Store
    45→
    46→# C/C++ build artifacts
    47→*.o
    48→*.a
    49→*.so
    50→*.dylib
    51→*.dll
    52→*.exe
    53→*.out
    54→*.app
    55→*.i
    56→*.s
    57→*.lo
    58→*.la
    59→*.lai
    60→*.mod
    61→*.smod
    62→
    63→# Autotools (keep configure scripts from source distributions)
    64→autom4te.cache/
    65→config.log
    66→config.status
    67→.deps/
    68→.libs/
    69→libtool
    70→stamp-h1
    71→
    72→# Build directories
    73→build/
    74→dist/
    75→_build/
    76→*.build/
    77→install/
    78→
    79→# Documentation builds (generated HTML docs)
    80→docs/_build/
    81→**/html/
    82→**/doc/
    83→**/docs/
    84→*.pdf
    85→*.ps
    86→*.dvi
    87→*.tex
    88→*.info
    89→*.info-*
    90→texinfo.tex
    91→
    92→# Archives and compressed files
    93→*.tar.gz
    94→*.tgz
    95→*.zip
    96→*.bz2
    97→*.xz
    98→
    99→# FITS test files (can be large)
   100→*.fits
   101→*.fit
   102→
   103→# Backup files
   104→*.bak
   105→*.orig
   106→*.rej
   107→
   108→# Changelog files (can be very large)
   109→ChangeLog
   110→<<<<<<< HEAD
   111→=======
   112→CHANGES
   113→*.log
   114→>>>>>>> 1e969e0 (Bundle CPL library and dependencies with pycpl)
   115→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

M  .gitignore
D  cfitsio-4.6.2/aclocal.m4
D  cfitsio-4.6.2/config/ltmain.sh
D  cfitsio-4.6.2/m4/libtool.m4
D  cfitsio-4.6.2/m4/ltoptions.m4
D  cfitsio-4.6.2/m4/ltsugar.m4
D  cfitsio-4.6.2/m4/ltversion.m4
D  cfitsio-4.6.2/m4/lt~obsolete.m4
D  cpl-7.3.2/acinclude.m4
D  cpl-7.3.2/aclocal.m4
D  cpl-7.3.2/admin/ltmain.sh
D  cpl-7.3.2/libcext/acinclude.m4
D  cpl-7.3.2/libcext/aclocal.m4
D  cpl-7.3.2/libcext/admin/ltmain.sh
D  cpl-7.3.2/libcext/m4/eso.m4
D  cpl-7.3.2/libcext/m4/libtool.m4
D  cpl-7.3.2/libcext/m4/ltoptions.m4
D  cpl-7.3.2/libcext/m4/ltsugar.m4
D  cpl-7.3.2/libcext/m4/ltversion.m4
D  cpl-7.3.2/libcext/m4/lt~obsolete.m4
D  cpl-7.3.2/libltdl/aclocal.m4
D  cpl-7.3.2/m4/cpl.m4
D  cpl-7.3.2/m4/eso.m4
D  cpl-7.3.2/m4/libtool.m4
D  cpl-7.3.2/m4/ltargz.m4
D  cpl-7.3.2/m4/ltdl.m4
D  cpl-7.3.2/m4/ltoptions.m4
D  cpl-7.3.2/m4/ltsugar.m4
D  cpl-7.3.2/m4/ltversion.m4
D  cpl-7.3.2/m4/lt~obsolete.m4
D  cpl-7.3.2/m4/omp.m4
D  fftw-3.3.10/aclocal.m4
D  fftw-3.3.10/ltmain.sh
D  fftw-3.3.10/m4/acx_mpi.m4
D  fftw-3.3.10/m4/acx_pthread.m4
D  fftw-3.3.10/m4/ax_cc_maxopt.m4
D  fftw-3.3.10/m4/ax_check_compiler_flags.m4
D  fftw-3.3.10/m4/ax_compiler_vendor.m4
D  fftw-3.3.10/m4/ax_gcc_aligns_stack.m4
D  fftw-3.3.10/m4/ax_gcc_version.m4
D  fftw-3.3.10/m4/ax_openmp.m4
D  fftw-3.3.10/m4/libtool.m4
D  fftw-3.3.10/m4/ltoptions.m4
D  fftw-3.3.10/m4/ltsugar.m4
D  fftw-3.3.10/m4/ltversion.m4
D  fftw-3.3.10/m4/lt~obsolete.m4
M  pycpl-1.0.3/MANIFEST.in
M  pycpl-1.0.3/setup.py
R  cfitsio-4.6.2/CMakeLists.txt -> pycpl-1.0.3/vendor/cfitsio-4.6.2/CMakeLists.txt
R  cfitsio-4.6.2/INSTALL -> pycpl-1.0.3/vendor/cfitsio-4.6.2/INSTALL

Exit code 1
pycpl-1.0.3/vendor/cfitsio-4.6.2/aclocal.m4: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/config/ltmain.sh: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/libtool.m4: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltoptions.m4: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltsugar.m4: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/ltversion.m4: needs merge
pycpl-1.0.3/vendor/cfitsio-4.6.2/m4/lt~obsolete.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/acinclude.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/aclocal.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/admin/ltmain.sh: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/acinclude.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/aclocal.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/admin/ltmain.sh: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/eso.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/libtool.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltoptions.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltsugar.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/ltversion.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libcext/m4/lt~obsolete.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/libltdl/aclocal.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/cpl.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/eso.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/libtool.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/ltargz.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/ltdl.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/ltoptions.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/ltsugar.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/ltversion.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/lt~obsolete.m4: needs merge
pycpl-1.0.3/vendor/cpl-7.3.2/m4/omp.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/aclocal.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/ltmain.sh: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/acx_mpi.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/acx_pthread.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_cc_maxopt.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_check_compiler_flags.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_compiler_vendor.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_gcc_aligns_stack.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_gcc_version.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ax_openmp.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/libtool.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltoptions.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltsugar.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/ltversion.m4: needs merge
pycpl-1.0.3/vendor/fftw-3.3.10/m4/lt~obsolete.m4: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/fitshdr.c: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsbth.c: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcspih.c: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsulex.c: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/C/flexed/wcsutrn.c: needs merge
pycpl-1.0.3/vendor/wcslib-8.2.2/CHANGES: needs merge
You must edit all merge conflicts and then
mark them as resolved using git add

[detached HEAD 69b1f1f] Bundle CPL library and dependencies with pycpl
 4114 files changed, 851 insertions(+), 4242 deletions(-)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/CMakeLists.txt (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/INSTALL (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/Makefile.am (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/Makefile.in (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.MacOS (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.md (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README.win (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/README_OLD.win (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/aclocal.m4 (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/buffers.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfileio.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.pc.cmake (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.pc.in (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfitsio.xcodeproj/project.pbxproj (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cfortran.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/checksum.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/cmake/cfitsioConfig.cmake (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/compile (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/config.guess (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/config.sub (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/depcomp (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/install-sh (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/ltmain.sh (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/config/missing (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/configure (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/configure.ac (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrfile.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrgsiftp.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrgsiftp.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrmem.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrnet.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrsmem.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/drvrsmem.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/editcol.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/edithdu.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval.l (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval.y (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_defs.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_f.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_l.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_tab.h (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/eval_y.c (100%)
 rename {cfitsio-4.6.2 => pycpl-1.0.3/vendor/cfitsio-4.6.2}/f77.inc (100%)
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/home/user/pycpl/pycpl-1.0.3
total 809
drwxr-xr-x 1 root root   4096 Nov 17 12:23 .
drwxr-xr-x 1 root root   4096 Nov 17 12:23 ..
-rw-r--r-- 1 root root   8275 Nov 17 11:34 .clang-format
-rw-r--r-- 1 root root  17892 Nov 17 11:34 CHANGELOG.md
-rw-r--r-- 1 root root   5763 Nov 17 11:34 CMakeLists.txt
-rw-r--r-- 1 root root  35149 Nov 17 11:34 LICENSE
-rw-r--r-- 1 root root    382 Nov 17 12:23 MANIFEST.in
-rw-r--r-- 1 root root  19409 Nov 17 11:34 PKG-INFO
-rw-r--r-- 1 root root  18065 Nov 17 11:34 README.md
-rw-r--r-- 1 root root 127230 Nov 17 11:39 build.log
-rw-r--r-- 1 root root 138337 Nov 17 11:43 build2.log
-rw-r--r-- 1 root root 147901 Nov 17 11:47 build3.log
-rw-r--r-- 1 root root 144495 Nov 17 11:49 build4.log
-rw-r--r-- 1 root root  30128 Nov 17 11:52 build5.log
-rw-r--r-- 1 root root  28709 Nov 17 11:56 build6.log
-rw-r--r-- 1 root root  32750 Nov 17 12:00 build_final.log
-rw-r--r-- 1 root root  32109 Nov 17 12:05 build_final2.log
drwxr-xr-x 2 root root   4096 Nov 17 11:34 cmake
-rw-r--r-- 1 root root    117 Nov 17 11:34 pyproject.toml
-rw-r--r-- 1 root root     53 Nov 17 11:34 pytest.ini
-rw-r--r-- 1 root root   1122 Nov 17 11:34 setup.cfg
-rw-r--r-- 1 root root  11116 Nov 17 12:23 setup.py
drwxr-xr-x 6 root root   4096 Nov 17 11:34 src
drwxr-xr-x 7 root root   4096 Nov 17 11:34 tests
drwxr-xr-x 1 root root   4096 Nov 17 12:23 vendor

checking whether debugging code should be created... no
checking whether strict compiler options should be used... no
checking whether profiling compiler options should be used... no
checking for doxygen... no
checking for latex... no
checking for Java Development Kit... /usr/lib/jvm/java-21-openjdk-amd64, headers /usr/lib/jvm/java-21-openjdk-amd64/include, /usr/lib/jvm/java-21-openjdk-amd64/include/linux
checking whether gcc supports -pthread... yes
checking for pthread_create in -lpthread... yes
checking for pthread.h... yes
checking for the compiler option to support OpenMP... -fopenmp
checking whether thread support is available... yes
checking for library containing omp_get_num_threads... none required
checking for socket in -lsocket... no
checking for inet_ntoa in -lnsl... no
checking for pkg-config... pkg-config
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for cfitsio... yes
checking for a cfitsio version >= 3.35... 4.6
checking whether cfitsio provides fits_hdu_getoff()... yes
checking whether cfitsio provides fits_get_hduaddrll()... yes
checking whether cfitsio was compiled with thread support... yes
checking for wcslib... no
configure: error: wcslib (headers) was not found on your system.
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 270, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 82, in build_dependencies
    self._build_cpl(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 182, in _build_cpl
    subprocess.run([
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 1.

total 9
drwxr-xr-x 2 root root 4096 Nov 17 12:27 .
drwxr-xr-x 4 root root 4096 Nov 17 12:27 ..
-rw-r--r-- 1 root root  352 Nov 17 12:26 cfitsio.pc
-rw-r--r-- 1 root root  501 Nov 17 12:27 fftw3.pc

build/temp.linux-x86_64-cpython-311/deps/install/lib/libwcs-8.2.2.a
build/temp.linux-x86_64-cpython-311/deps/install/lib/libwcs.so.8.2.2
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcshdr.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcsfix.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcsprintf.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcs.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcsunits.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/getwcstab.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcslib.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcserr.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcstrig.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcsutil.h
build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib-8.2.2/wcsmath.h

vendor/wcslib-8.2.2/wcslib.pc.in
vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/cfitsio-build/cfitsio.pc
vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/fftw3.pc
vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/cfitsio.pc
vendor/wcslib-8.2.2/build/temp.linux-x86_64-cpython-311/deps/install/lib/pkgconfig/wcslib.pc

   131→    def _build_wcslib(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   132→        """Build wcslib library"""
   133→        print("\n>>> Building wcslib...")
   134→        src_dir = vendor_dir / "wcslib-8.2.2"
   135→
   136→        # wcslib doesn't support out-of-tree builds well, build in-source
   137→        env = os.environ.copy()
   138→        # Set proper LDFLAGS and CFLAGS instead of CFITSIOLIB/CFITSIOINC
   139→        env["LDFLAGS"] = f"-L{install_dir / 'lib'}"
   140→        env["CFLAGS"] = f"-I{install_dir / 'include'}"
   141→        env["LD_LIBRARY_PATH"] = str(install_dir / "lib")
   142→
   143→        subprocess.run([
   144→            "./configure",
   145→            f"--prefix={install_dir}",
   146→            "--without-pgplot",
   147→            "--disable-fortran",
   148→        ], cwd=src_dir, env=env, check=True)
   149→
   150→        subprocess.run(["make", f"-j{njobs}"], cwd=src_dir, check=True)
   151→        # Install only libraries, skip documentation to avoid missing file errors
   152→        subprocess.run(["make", "-C", "C", "install"], cwd=src_dir, check=True)
   153→        # Install pkg-config file
   154→        subprocess.run(["make", "install-lib"], cwd=src_dir, check=False)  # This may partially fail but installs what we need
   155→        # Clean up build artifacts
   156→        subprocess.run(["make", "distclean"], cwd=src_dir, check=False)
   157→        print(">>> wcslib built successfully")
   158→
   159→    def _build_cpl(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   160→        """Build CPL library"""

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

checking for argz_count... yes
checking for argz_create_sep... yes
checking for argz_insert... yes
checking for argz_next... yes
checking for argz_stringify... yes
checking if argz actually works... yes
checking whether libtool supports -dlopen/-dlpreopen... yes
checking for ltdl.h... no
checking where to find libltdl headers... -I$(top_srcdir)/libltdl
checking where to find libltdl library... $(top_build_prefix)libltdl/libltdlc.la
checking for unistd.h... (cached) yes
checking for dl.h... no
checking for sys/dl.h... no
checking for dld.h... no
checking for mach-o/dyld.h... no
checking for dirent.h... yes
checking for closedir... yes
checking for opendir... yes
checking for readdir... yes
checking for strlcat... yes
checking for strlcpy... yes
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking whether gcc and cc understand -c and -o together... yes
checking whether gcc supports -std=c99... yes
checking whether gcc supports -fno-common... yes
checking whether debugging code should be created... no
checking whether strict compiler options should be used... no
checking whether profiling compiler options should be used... no
checking for doxygen... no
checking for latex... no
checking for Java Development Kit... /usr/lib/jvm/java-21-openjdk-amd64, headers /usr/lib/jvm/java-21-openjdk-amd64/include, /usr/lib/jvm/java-21-openjdk-amd64/include/linux
checking whether gcc supports -pthread... yes
checking for pthread_create in -lpthread... yes
checking for pthread.h... yes
checking for the compiler option to support OpenMP... -fopenmp
checking whether thread support is available... yes
checking for library containing omp_get_num_threads... none required
checking for socket in -lsocket... no
checking for inet_ntoa in -lnsl... no
checking for pkg-config... pkg-config
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for cfitsio... yes
checking for a cfitsio version >= 3.35... 4.6
checking whether cfitsio provides fits_hdu_getoff()... yes
checking whether cfitsio provides fits_get_hduaddrll()... yes
checking whether cfitsio was compiled with thread support... yes
checking for wcslib... no
configure: error: wcslib (headers) was not found on your system.
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 274, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 82, in build_dependencies
    self._build_cpl(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 186, in _build_cpl
    subprocess.run([
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 1.

total 10
drwxr-xr-x 2 root root 4096 Nov 17 12:30 .
drwxr-xr-x 4 root root 4096 Nov 17 12:30 ..
-rw-r--r-- 1 root root  352 Nov 17 12:29 cfitsio.pc
-rw-r--r-- 1 root root  501 Nov 17 12:29 fftw3.pc
-rw-r--r-- 1 root root  336 Nov 17 12:30 wcslib.pc

Package wcslib was not found in the pkg-config search path.
Perhaps you should add the directory containing `wcslib.pc'
to the PKG_CONFIG_PATH environment variable
Package 'wcslib', required by 'virtual:world', not found
wcslib not found via pkg-config

prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install
exec_prefix=${prefix}
libdir=${exec_prefix}/lib
includedir=${prefix}/include/wcslib

Name: WCSLIB
Description: An implementation of the FITS World Coordinate System standard
Version: 8.2.2
Requires:
Libs: -L${libdir} -lwcs -lm
Cflags: -I${includedir}

   159→        # Clean up build artifacts
   160→        subprocess.run(["make", "distclean"], cwd=src_dir, check=False)
   161→        print(">>> wcslib built successfully")
   162→
   163→    def _build_cpl(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   164→        """Build CPL library"""
   165→        print("\n>>> Building CPL...")
   166→        src_dir = vendor_dir / "cpl-7.3.2"
   167→
   168→        # CPL uses autoconf and needs to find the dependencies
   169→        env = os.environ.copy()
   170→        env["PKG_CONFIG_PATH"] = str(install_dir / "lib" / "pkgconfig")
   171→        env["CFITSIO_CFLAGS"] = f"-I{install_dir / 'include'}"
   172→        env["CFITSIO_LIBS"] = f"-L{install_dir / 'lib'} -lcfitsio"
   173→        env["FFTW3_CFLAGS"] = f"-I{install_dir / 'include'}"
   174→        env["FFTW3_LIBS"] = f"-L{install_dir / 'lib'} -lfftw3"
   175→        env["WCSLIB_CFLAGS"] = f"-I{install_dir / 'include'} -I{install_dir / 'include' / 'wcslib'}"
   176→        env["WCSLIB_LIBS"] = f"-L{install_dir / 'lib'} -lwcs"
   177→        env["CPPFLAGS"] = f"-I{install_dir / 'include'}"
   178→        env["LDFLAGS"] = f"-L{install_dir / 'lib'}"

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

>>> Building wcslib...
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for flex... flex
configure: Using Flex version 2.6.4.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking for an ANSI C-conforming const... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for off_t... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for ctype.h... yes
checking for errno.h... yes
checking for limits.h... yes
checking for locale.h... yes
checking for math.h... yes
checking for setjmp.h... yes
checking for stdarg.h... yes
checking for stdio.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for floor in -lm... yes
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for GNU libc compatible malloc...

checking whether cfitsio provides fits_get_hduaddrll()... yes
checking whether cfitsio was compiled with thread support... yes
checking for wcslib... no
configure: error: wcslib (headers) was not found on your system.
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 274, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 82, in build_dependencies
    self._build_cpl(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 186, in _build_cpl
    subprocess.run([
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 1.

configure:18465: checking for wcslib
configure:18545: gcc -c -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib  -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500 conftest.c >&5
In file included from /home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib/wcslib.h:41,
                 from conftest.c:63:
/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib/fitshdr.h:375:10: fatal error: wcsconfig.h: No such file or directory
  375 | #include "wcsconfig.h"
      |          ^~~~~~~~~~~~~
compilation terminated.
configure:18545: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "Common Pipeline Library"
| #define PACKAGE_TARNAME "cpl"
| #define PACKAGE_VERSION "7.3.2"
| #define PACKAGE_STRING "Common Pipeline Library 7.3.2"
| #define PACKAGE_BUGREPORT "cpl-help@eso.org"
| #define PACKAGE_URL ""
| #define PACKAGE "cpl"
| #define VERSION "7.3.2"
| #define HAVE_STDIO_H 1
| #define HAVE_STDLIB_H 1

>>> Building cfitsio...
 3908 |     snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got unexpected %s", statusstr, recbuf);
 3901 |       snprintf(errorstr,SHORTLEN,"ERROR ftp_status wants %s but got %s", statusstr, recbuf);
>>> cfitsio built successfully
>>> Building fftw...
>>> fftw built successfully
>>> Building wcslib...
>>> wcslib built successfully
>>> Building CPL...
configure: error: fftw (libraries) was not found on your system.
Traceback (most recent call last):

lrwxrwxrwx 1 root root      17 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3.so -> libfftw3.so.3.6.9
-rw-r--r-- 1 root root 1292168 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3.so.3
lrwxrwxrwx 1 root root      13 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3.so.3.6.9 -> libfftw3.so.3
lrwxrwxrwx 1 root root      25 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3_threads.so -> libfftw3_threads.so.3.6.9
-rw-r--r-- 1 root root   41904 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3_threads.so.3
lrwxrwxrwx 1 root root      21 Nov 17 12:37 build/temp.linux-x86_64-cpython-311/deps/install/lib/libfftw3_threads.so.3.6.9 -> libfftw3_threads.so.3

prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install
exec_prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install
libdir=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib
includedir=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include

Name: FFTW
Description: fast Fourier transform library
Version: 3.3.9
Libs: -L${libdir} -lfftw3 
Libs.private: -lm
Cflags: -I${includedir}

configure:18848: checking for fftw (double precision)
configure:18927: gcc -c -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include  -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500 conftest.c >&5
configure:18927: $? = 0
configure:18956: gcc -o conftest -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include  -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500 -L/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib  conftest.c -lfftw3  >&5
configure:18956: $? = 0
configure:19002: result: yes
configure:19016: checking for a fftw version >= 3.3.3
configure:19107: gcc -o conftest -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include  -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500 -L/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib  conftest.c -lfftw3  >&5
configure:19107: $? = 0
configure:19107: ./conftest
configure:19107: $? = 0
--
configure:19164: checking for fftw (single precision)
configure:19243: gcc -c -I/usr/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include -I/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/include/wcslib -D_POSIX_C_SOURCE=200809L -D_XOPEN_SOURCE=500 conftest.c >&5
configure:19243: $? = 0

| 
|   ;
|   return 0;
| }
configure:19312: result: no
configure:19314: error: fftw (libraries) was not found on your system.

| #define LT_LIBEXT "a"
| #define LT_LIBPREFIX "lib"
| #define CPL_MAJOR_VERSION 7
| #define CPL_MINOR_VERSION 3
| #define CPL_MICRO_VERSION 2
| #define CPL_INTERFACE_AGE 3
| #define CPL_BINARY_VERSION 459522
| #define CPL_BINARY_AGE 770
| #define HAVE_PTHREAD_H 1
| #define CPL_THREADS_ENABLED 1
| #define CPL_CFITSIO_VERSION 4.6
| #define CPL_CFITSIO_MAJOR 4
| #define CPL_CFITSIO_MINOR 6
| #define HAVE_FITS_GET_HDUOFF 1
| #define CPL_WCS_INSTALLED 1
| #define CPL_FFTW_VERSION "3.3.9"
| #define CPL_FFTW_INSTALLED 1
| /* end confdefs.h.  */
| 
|                            #include <fftw3.h>
| 
| int
| main (void)
| {
| 
|                             fftwf_plan_dft_1d(0, (void *)0, (void *)0, 0, 0);
| 
|   ;
|   return 0;
| }
configure:19312: result: no

libfftw3.so
libfftw3.so.3
libfftw3.so.3.6.9
libfftw3_threads.so
libfftw3_threads.so.3
libfftw3_threads.so.3.6.9

   110→    def _build_fftw(self, vendor_dir: Path, build_dir: Path, install_dir: Path, njobs: str) -> None:
   111→        """Build fftw library"""
   112→        print("\n>>> Building fftw...")
   113→        src_dir = vendor_dir / "fftw-3.3.10"
   114→        build_subdir = build_dir / "fftw-build"
   115→        build_subdir.mkdir(parents=True, exist_ok=True)
   116→
   117→        # Use CMake for fftw
   118→        subprocess.run([
   119→            "cmake",
   120→            str(src_dir),
   121→            f"-DCMAKE_INSTALL_PREFIX={install_dir}",
   122→            "-DCMAKE_BUILD_TYPE=Release",
   123→            "-DBUILD_SHARED_LIBS=ON",
   124→            "-DENABLE_THREADS=ON",
   125→        ], cwd=build_subdir, check=True)
   126→
   127→        subprocess.run(["cmake", "--build", ".", "-j", njobs], cwd=build_subdir, check=True)
   128→        subprocess.run(["cmake", "--install", "."], cwd=build_subdir, check=True)
   129→        print(">>> fftw built successfully")

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
./configure: line 13011: syntax error near unexpected token `2,'
./configure: line 13011: `ESO_SET_LIBRARY_VERSION(2, 4, 2)'
configure: error: ./configure failed for libcext
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 301, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 82, in build_dependencies
    self._build_cpl(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 213, in _build_cpl
    subprocess.run([
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 2.

vendor/cpl-7.3.2/m4/eso.m4:# ESO_SET_LIBRARY_VERSION([CURRENT], [REVISION], [AGE])
vendor/cpl-7.3.2/m4/eso.m4:AC_DEFUN([ESO_SET_LIBRARY_VERSION],
vendor/cpl-7.3.2/libcext/m4/eso.m4:# ESO_SET_LIBRARY_VERSION([CURRENT], [REVISION], [AGE])
vendor/cpl-7.3.2/libcext/m4/eso.m4:AC_DEFUN([ESO_SET_LIBRARY_VERSION],

/home/user/pycpl/pycpl-1.0.3
cfitsio-4.6.2
cpl-7.3.2
fftw-3.3.10
wcslib-8.2.2

libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, '../admin'.
libtoolize:   error: '../admin/compile' exists: use '--force' to overwrite
libtoolize: copying file '../admin/config.guess'
libtoolize: copying file '../admin/config.sub'
libtoolize:   error: '../admin/depcomp' exists: use '--force' to overwrite
libtoolize:   error: '../admin/missing' exists: use '--force' to overwrite
libtoolize:   error: '/usr/share/aclocal/ltdl.m4' does not exist.
autoreconf: error: libtoolize failed with exit status: 1

checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
./configure: line 13011: syntax error near unexpected token `2,'
./configure: line 13011: `ESO_SET_LIBRARY_VERSION(2, 4, 2)'
configure: error: ./configure failed for libcext
Traceback (most recent call last):
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 301, in <module>
    setup(
  File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 107, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 185, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
    dist.run_commands()
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
    self.run_command(cmd)
  File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 1233, in run_command
    super().run_command(command)
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
    cmd_obj.run()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 51, in run
    self.build_dependencies()
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 82, in build_dependencies
    self._build_cpl(vendor_dir, deps_build_dir, deps_install_dir, njobs)
  File "/home/user/pycpl/pycpl-1.0.3/setup.py", line 213, in _build_cpl
    subprocess.run([
  File "/usr/lib/python3.11/subprocess.py", line 571, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./configure', '--prefix=/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install', '--disable-static', '--enable-shared']' returned non-zero exit status 2.

#           AGE++;
#       if (any interfaces have been _removed_ or incompatibly changed)
#           AGE = 0;
#   }

# Order of arguments: CURRENT, REVISION, AGE
ESO_SET_LIBRARY_VERSION(2, 4, 2)

# Checks for programs.
{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking for egrep" >&5
printf %s "checking for egrep... " >&6; }

autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'admin'.
libtoolize: copying file 'admin/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: aclocal --force -I m4
autoreconf: running: /usr/bin/autoconf --force
autoreconf: running: /usr/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:17: installing 'admin/compile'
configure.ac:12: installing 'admin/missing'
cext/Makefile.am: installing 'admin/depcomp'
autoreconf: Leaving directory '.'

/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp:245:31: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  245 |           numpy_dtype.get_type().attr("__name__").cast<std::string>());
      |           ~~~~~~~~~~~~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:2601:8: note: declared here
 2601 | handle object_api<D>::get_type() const {
      |        ^~~~~~~~~~~~~
/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp:361:39: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  361 |                          data.get_type().attr("__name__").cast<std::string>());
      |                          ~~~~~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:2601:8: note: declared here
 2601 | handle object_api<D>::get_type() const {
      |        ^~~~~~~~~~~~~
/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp:373:39: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  373 |                          data.get_type().attr("__name__").cast<std::string>());
      |                          ~~~~~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:2601:8: note: declared here
 2601 | handle object_api<D>::get_type() const {
      |        ^~~~~~~~~~~~~
/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/image_bindings.cpp:3788:37: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
 3788 |                          it.get_type().attr("__name__").cast<std::string>());
      |                          ~~~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:2601:8: note: declared here
 2601 | handle object_api<D>::get_type() const {
      |        ^~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/image.cpp.o
[ 16%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/imagelist.cpp.o
[ 18%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/io_bindings.cpp.o
[ 20%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/mask_bindings.cpp.o
[ 22%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/mask.cpp.o
[ 23%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/matrix_bindings.cpp.o
/home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.cpp: In function ‘cpl::core::Matrix matrix_from_python_matrix(pybind11::object)’:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.cpp:72:24: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
   72 |         matrix.get_type().attr("__name__").cast<std::string>());
      |         ~~~~~~~~~~~~~~~^~
In file included from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/native_enum_data.h:7,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/cast.h:15,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:14,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:12,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.hpp:22,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.cpp:17:
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:216:12: note: declared here
  216 |     handle get_type() const;
      |            ^~~~~~~~
/home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/matrix_bindings.cpp:165:37: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  165 |                        data.get_type().attr("__name__").cast<std::string>());
      |                        ~~~~~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:2601:8: note: declared here
 2601 | handle object_api<D>::get_type() const {
      |        ^~~~~~~~~~~~~
[ 25%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/matrix.cpp.o
[ 27%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/msg_bindings.cpp.o
[ 28%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/msg.cpp.o
[ 30%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/polynomial_bindings.cpp.o
[ 32%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/polynomial.cpp.o
[ 33%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/property_bindings.cpp.o
[ 35%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/property.cpp.o
[ 37%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/propertylist.cpp.o
[ 38%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/table_bindings.cpp.o
/home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.cpp: In function ‘cpl_array* py_array_to_cpl(pybind11::object)’:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.cpp:54:28: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
   54 |             << obj.get_type().attr("__name__").cast<std::string>();
      |                ~~~~~~~~~~~~^~
In file included from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/native_enum_data.h:7,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/cast.h:15,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:14,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:12,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.hpp:20,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.cpp:17:
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:216:12: note: declared here
  216 |     handle get_type() const;
      |            ^~~~~~~~
/home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplcore/table_bindings.cpp:506:41: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::detail::accessor<pybind11::detail::accessor_policies::generic_item>]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  505 |                         << input[col_name.c_str()]
      |                            ~~~~~~~~~~~~~~~~~~~~~~~
  506 |                                .get_type()
      |                                ~~~~~~~~~^~
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:216:12: note: declared here
  216 |     handle get_type() const;
      |            ^~~~~~~~
[ 40%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/table.cpp.o
[ 42%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/type_bindings.cpp.o
[ 44%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/types.cpp.o
[ 45%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/vector_bindings.cpp.o
[ 47%] Building CXX object CMakeFiles/cpl.dir/src/cplcore/vector.cpp.o
[ 49%] Building CXX object CMakeFiles/cpl.dir/src/cpldfs/dfs_bindings.cpp.o
[ 50%] Building CXX object CMakeFiles/cpl.dir/src/cpldfs/dfs.cpp.o
[ 52%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/apertures_bindings.cpp.o
[ 54%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/apertures.cpp.o
[ 55%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/detector_bindings.cpp.o
[ 57%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/detector.cpp.o
[ 59%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/fft_bindings.cpp.o
[ 61%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/fft.cpp.o
[ 62%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/fit_bindings.cpp.o
[ 64%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/fit.cpp.o
[ 66%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/geom_img_bindings.cpp.o
[ 67%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/geom_img.cpp.o
[ 69%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/photom_bindings.cpp.o
[ 71%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/photom.cpp.o
[ 72%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/ppm_bindings.cpp.o
[ 74%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/ppm.cpp.o
[ 76%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/wcs_bindings.cpp.o
[ 77%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/wcs.cpp.o
[ 79%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/wlcalib_bindings.cpp.o
[ 81%] Building CXX object CMakeFiles/cpl.dir/src/cpldrs/wlcalib.cpp.o
[ 83%] Building CXX object CMakeFiles/cpl.dir/src/cplui/frame_bindings.cpp.o
/home/user/pycpl/pycpl-1.0.3/src/cplui/frame_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplui/frame_bindings.cpp:371:33: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  371 |                      it.get_type().attr("__name__").cast<std::string>());
      |                      ~~~~~~~~~~~^~
In file included from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/native_enum_data.h:7,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/cast.h:15,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:14,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:12,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplui/frame_bindings.hpp:20,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplui/frame_bindings.cpp:17:
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:216:12: note: declared here
  216 |     handle get_type() const;
      |            ^~~~~~~~
[ 84%] Building CXX object CMakeFiles/cpl.dir/src/cplui/frame.cpp.o
[ 86%] Building CXX object CMakeFiles/cpl.dir/src/cplui/frameset.cpp.o
[ 88%] Building CXX object CMakeFiles/cpl.dir/src/cplui/parameter_bindings.cpp.o
/home/user/pycpl/pycpl-1.0.3/src/cplui/parameter_bindings.cpp: In lambda function:
/home/user/pycpl/pycpl-1.0.3/src/cplui/parameter_bindings.cpp:525:32: warning: ‘pybind11::handle pybind11::detail::object_api<Derived>::get_type() const [with Derived = pybind11::handle]’ is deprecated: Call py::type::handle_of(h) or py::type::of(h) instead of h.get_type() [-Wdeprecated-declarations]
  525 |                     it.get_type().attr("__name__").cast<std::string>());
      |                     ~~~~~~~~~~~^~
In file included from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/native_enum_data.h:7,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/cast.h:15,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/attr.h:14,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/detail/class.h:12,
                 from /usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pybind11.h:12,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplui/parameter_bindings.hpp:20,
                 from /home/user/pycpl/pycpl-1.0.3/src/cplui/parameter_bindings.cpp:17:
/usr/local/lib/python3.11/dist-packages/pybind11/include/pybind11/pytypes.h:216:12: note: declared here
  216 |     handle get_type() const;
      |            ^~~~~~~~
[ 89%] Building CXX object CMakeFiles/cpl.dir/src/cplui/parameter.cpp.o
[ 91%] Building CXX object CMakeFiles/cpl.dir/src/cplui/parameterlist.cpp.o
[ 93%] Building CXX object CMakeFiles/cpl.dir/src/cplui/plugin_bindings.cpp.o
[ 94%] Building CXX object CMakeFiles/cpl.dir/src/cplui/plugin.cpp.o
[ 96%] Building CXX object CMakeFiles/cpl.dir/src/dump_handler.cpp.o
[ 98%] Building CXX object CMakeFiles/cpl.dir/src/pycpl.cpp.o
[100%] Linking CXX shared module /home/user/pycpl/pycpl-1.0.3/build/lib.linux-x86_64-cpython-311/cpl.cpython-311-x86_64-linux-gnu.so
[100%] Built target cpl

Exit code 1
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: libcpldrs.so.26: cannot open shared object file: No such file or directory

Exit code 1
<frozen importlib._bootstrap>:241: UserWarning: An error occurred trying to read the esopipes-plugin directory '/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/esopipes-plugins': filesystem error: recursive directory iterator cannot open directory: No such file or directory [/home/user/pycpl/pycpl-1.0.3/build/temp.linux-x86_64-cpython-311/deps/install/lib/esopipes-plugins]
Traceback (most recent call last):
  File "<string>", line 3, in <module>
ModuleNotFoundError: No module named 'numpy'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
ImportError: initialization failed

 M setup.py
 M vendor/cpl-7.3.2/admin/config.guess
 M vendor/cpl-7.3.2/admin/config.sub
 M vendor/cpl-7.3.2/libcext/Makefile.in
 M vendor/cpl-7.3.2/libcext/admin/config.guess
 M vendor/cpl-7.3.2/libcext/admin/config.sub
 M vendor/cpl-7.3.2/libcext/admin/ltmain.sh
 M vendor/cpl-7.3.2/libcext/admin/test-driver
 M vendor/cpl-7.3.2/libcext/config.h.in
 M vendor/cpl-7.3.2/libcext/configure
 M vendor/cpl-7.3.2/libcext/m4/libtool.m4
 M vendor/cpl-7.3.2/libltdl/Makefile.in
 M vendor/cpl-7.3.2/libltdl/aclocal.m4
 M vendor/cpl-7.3.2/libltdl/config-h.in
 M vendor/cpl-7.3.2/libltdl/configure

M  setup.py
 M vendor/cpl-7.3.2/admin/config.guess
 M vendor/cpl-7.3.2/admin/config.sub
 M vendor/cpl-7.3.2/libcext/Makefile.in
 M vendor/cpl-7.3.2/libcext/admin/config.guess
 M vendor/cpl-7.3.2/libcext/admin/config.sub
M  vendor/cpl-7.3.2/libcext/admin/ltmain.sh
 M vendor/cpl-7.3.2/libcext/admin/test-driver
 M vendor/cpl-7.3.2/libcext/config.h.in
M  vendor/cpl-7.3.2/libcext/configure
M  vendor/cpl-7.3.2/libcext/m4/libtool.m4
 M vendor/cpl-7.3.2/libltdl/Makefile.in
 M vendor/cpl-7.3.2/libltdl/aclocal.m4
 M vendor/cpl-7.3.2/libltdl/config-h.in
 M vendor/cpl-7.3.2/libltdl/configure

M  setup.py
M  vendor/cpl-7.3.2/admin/config.guess
M  vendor/cpl-7.3.2/admin/config.sub
M  vendor/cpl-7.3.2/libcext/Makefile.in
M  vendor/cpl-7.3.2/libcext/admin/config.guess
M  vendor/cpl-7.3.2/libcext/admin/config.sub
M  vendor/cpl-7.3.2/libcext/admin/ltmain.sh
M  vendor/cpl-7.3.2/libcext/admin/test-driver
M  vendor/cpl-7.3.2/libcext/config.h.in
M  vendor/cpl-7.3.2/libcext/configure
M  vendor/cpl-7.3.2/libcext/m4/libtool.m4
M  vendor/cpl-7.3.2/libltdl/Makefile.in
M  vendor/cpl-7.3.2/libltdl/aclocal.m4
M  vendor/cpl-7.3.2/libltdl/config-h.in
M  vendor/cpl-7.3.2/libltdl/configure

remote: 
remote: Create a pull request for 'claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw' on GitHub by visiting:        
remote:      https://github.com/ivh/pycpl/pull/new/claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw        
remote: 
To http://127.0.0.1:64118/git/ivh/pycpl
 * [new branch]      claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw -> claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw
branch 'claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw' set up to track 'origin/claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw'.

     1→#==============================================================================
     2→# CFITSIO CMakeLists.txt
     3→#==============================================================================
     4→
     5→# Ensure that build directory is not the source directory:
     6→IF(${CMAKE_SOURCE_DIR} STREQUAL ${CMAKE_BINARY_DIR})
     7→	message(FATAL_ERROR
     8→		"Please create a separate directory for building CFITSIO."
     9→		)
    10→ENDIF()
    11→
    12→CMAKE_MINIMUM_REQUIRED(VERSION 3.1)
    13→
    14→# Suppress warning about WIN32 no longer being defined on Cygwin:
    15→SET(CMAKE_LEGACY_CYGWIN_WIN32 0)
    16→
    17→PROJECT(CFITSIO
    18→	DESCRIPTION "Library of C and Fortran subroutines for reading and writing data files in FITS data format."
    19→	LANGUAGES C CXX
    20→	)

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

     1→#==============================================================================
     2→# CFITSIO CMakeLists.txt
     3→#==============================================================================
     4→
     5→# Ensure that build directory is not the source directory:
     6→IF(${CMAKE_SOURCE_DIR} STREQUAL ${CMAKE_BINARY_DIR})
     7→	message(FATAL_ERROR
     8→		"Please create a separate directory for building CFITSIO."
     9→		)
    10→ENDIF()
    11→
    12→CMAKE_MINIMUM_REQUIRED(VERSION 3.1)
    13→
    14→# Suppress warning about WIN32 no longer being defined on Cygwin:
    15→SET(CMAKE_LEGACY_CYGWIN_WIN32 0)
    16→
    17→PROJECT(CFITSIO
    18→	DESCRIPTION "Library of C and Fortran subroutines for reading and writing data files in FITS data format."
    19→	LANGUAGES C CXX
    20→	)
    21→
    22→set(CMAKE_INCLUDE_CURRENT_DIR ON)
    23→set(CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)
    24→
    25→# Define project version
    26→SET(${PROJECT_NAME}_SONAME 10)
    27→SET(${PROJECT_NAME}_MAJOR 4)
    28→SET(${PROJECT_NAME}_MINOR 6)
    29→SET(${PROJECT_NAME}_MICRO 2)
    30→SET(${PROJECT_NAME}_VERSION ${${PROJECT_NAME}_MAJOR}.${${PROJECT_NAME}_MINOR}.${${PROJECT_NAME}_MICRO})

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

     1→cmake_minimum_required (VERSION 3.0)
     2→
     3→if (NOT DEFINED CMAKE_BUILD_TYPE)
     4→  set (CMAKE_BUILD_TYPE Release CACHE STRING "Build type")
     5→endif ()
     6→
     7→project (fftw)
     8→
     9→if (POLICY CMP0042)
    10→  cmake_policy (SET CMP0042 NEW)
    11→endif ()
    12→
    13→option (BUILD_SHARED_LIBS "Build shared libraries" ON)
    14→option (BUILD_TESTS "Build tests" ON)
    15→
    16→option (ENABLE_OPENMP "Use OpenMP for multithreading" OFF)
    17→option (ENABLE_THREADS "Use pthread for multithreading" OFF)
    18→option (WITH_COMBINED_THREADS "Merge thread library" OFF)
    19→
    20→option (ENABLE_FLOAT "single-precision" OFF)

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

     1→# This file is part of PyCPL the ESO CPL Python language bindings
     2→# Copyright (C) 2020-2024 European Southern Observatory
     3→#
     4→# This program is free software: you can redistribute it and/or modify
     5→# it under the terms of the GNU General Public License as published by
     6→# the Free Software Foundation, either version 3 of the License, or
     7→# (at your option) any later version.
     8→#
     9→# This program is distributed in the hope that it will be useful,
    10→# but WITHOUT ANY WARRANTY; without even the implied warranty of
    11→# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    12→# GNU General Public License for more details.
    13→#
    14→# You should have received a copy of the GNU General Public License
    15→# along with this program.  If not, see <http://www.gnu.org/licenses/>.
    16→
    17→cmake_minimum_required(VERSION 3.12)
    18→project(cpl)
    19→
    20→# Set policies

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

[ 72%] Built target cfitsio
[ 95%] Built target fitscopy
[ 95%] Built target imcopy
[ 95%] Built target smem
[ 95%] Built target cookbook
[ 95%] Built target speed
[ 98%] Built target funpack
[ 98%] Built target fpack
[100%] Built target TestProg
[100%] Built target fitsverify
>>> cfitsio built successfully
>>> Building fftw...
[ 90%] Built target fftw3
[ 93%] Built target fftw3_threads
[100%] Built target bench
>>> fftw built successfully
>>> Building wcslib...
>>> wcslib built successfully
>>> Building CPL...
configure: error: cannot find required auxiliary files: ltmain.sh

/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/install-sh
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/config.sub
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/config.guess
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/missing
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/doxygen.am
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/test-driver
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/compile
/home/user/pycpl/pycpl-1.0.3/vendor/cpl-7.3.2/admin/depcomp

1617102 Add single-precision FFTW and fix CPL libcext configure
69b1f1f Bundle CPL library and dependencies with pycpl
229325a add more files to make build easier
d3b8db5 Initial commit: pycpl with CPL and dependencies
From http://127.0.0.1:53095/git/ivh/pycpl
 * branch            claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw -> FETCH_HEAD
   d3b8db5..1617102  claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw -> origin/claude/bundle-cpl-library-0137tXcWUnEe9jMjQJksFkbw

/home/user/pycpl/pycpl-1.0.3
total 24
drwxr-xr-x 1 root root 4096 Nov 17 11:36 .
drwxr-xr-x 1 root root 4096 Nov 17 13:25 ..

./vendor/cpl-7.3.2/libcext/admin/ltmain.sh
./vendor/cpl-7.3.2/admin/ltmain.sh
./vendor/cpl-7.3.2/ltmain.sh
./vendor/fftw-3.3.10/ltmain.sh
./vendor/cfitsio-4.6.2/config/ltmain.sh